Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00965 ATGGCTAACTCCAAAAGCTTTTCATTTCTGATTTTCACTCTCCTAACCATTCTCCAACTCAGTAGTTTTTCCTCTGCACAAACTGTAGTGAAAGGAGGATATTGGTATTCTGATGCTGGCCTTGCCGTTTCCGACATTGATTCCACCCATTTCACTCACCTCTTCTGTGCCTTTGCTGACCTTGATACCAACACCAACCAAGTCACCATTTCATCTTCCAATGCACCCCTCTTCTCAACCTTCACCCAAACGGTTCAACAAAAGAACCCTTCAGTGAAAACCCTTCTTTCCATAGGTGGTGGAGGAGGTTCTTCCCTCGCACAAGCTTTTTCTACAATGGCCACCCAAGCAAGTACCCGCAAATCCTTCATAGATTCTTCAATTCAACTAGCCAGAAACAACAACTTCCATGGTCTTGATCTTGATTGGGAGTACCCTTCCTCTGCCACAGACAAGACCAATTTTGGGTTACTCATTAAGGAGTGGCGTGAAGCTATAGCTCAAGAATCCAATGACTCTGGTAAATCAGCATTGCTATTATCTGCAGCAGTGTCTGGATCTGACCAGATTTCATCATTGGACAATTACCCTGTTCCAGAAATTTCACAAAATTTGGACTTTGTCAATGTTATGGTCTATGACCTTTTCATACCAGGTGGGTACCCAGACAAGACACAACCACCTGCACCTTTGGAAAACCCAGAAGGACAATTCAGTGGAGATGAAGGGGTCACAAAATGGATTAACTTGGGACTGGCTAAAAACAAATTAGCAATTGGGTTGCCGTTTTATGGATATTCATGGCGTTTGGTGAATGCTGATGAGCATGGAATATTTGAGAGTGCTAATGGTGCAGCAACTTCTGATGGTGGAGATGGGTCTATGGGATACAGTCAGATAAGGGGTTTTATAAGCCAGAATGGAGCACAGACTGTGTTCAATGCAACAGTTGTCTCAGATTATTGCTATTATGGGACAACATGGATTGGTTATGATGATACTCAGAGTGTCTCTACCAAGGTGACTTATGCCAAGGGAAAGGGTTTGCGTGGGTATTTTGTTTGGCACGTTGGTGCTGACTACAATTGGGTTCTTTCTCAAACCGAAGCTCAATCATGGGTGAAAGCTGGTTATTACTATTCCGGCAGTGAAATTTCTGCTTCAGACATAAAAGCCACGCTTTTTACTCACCTCTTATGTGCTTTTGCTTTTATAAACTCCACCAACTACAACATCTTTATCAACTCTTCAGAGGAGCACAAGTTCTCCACCTTCACCAACACTGTAAAGCTCCAAAACCCATCTGTTTCAACACTTTTATCCATCTGGGGTGGCAGAGAGGACTCTCCAGTTTTTACCTCAATGCTAAACCAATCTTCTTATAGGAAATCTTTCATTGATTCTTCGGTTAAAACAGCCAGGCTATATGGCTTTCAGGGCATAGACCTTTGTGGGGCCTGGCCAAGACAGGATAAGGATCTTGCCAATTTTGGAACCCTTTTGAAGGAATGGCGAGCTGCAATAACTTCTGAGGCAAGAAACTCTAGCAAGCCAGAGTTAGTGTTGGTGATGGCAGGTTACTACCTTAAAGCTTCAGACTCCTTGAGCTACCCCTTCAAATCAATGCAAATGAACTTGGATTGGGTGCATTTTGTGGCATATGATTACTATCTTCCTAGGAAAGACAATGTCACTGGTTTTCATGCTGCTTTATATGGTCCATCTGGTTGGGATAATACTGATTCTGGTATCAAAGAGTGGAGGAGGGGGGGATTTTCATCTAGCAAGCTGGTAATTGGCTTGCCTTATCATGGATATGCATGGACACTTGTGAAGCCAGGAGATAACAGCGTGGGAAAACCAACATCAGGACCTGCCATTACAATGGATGGTTCCATGGCTTATAAGCTGATAAAGAGTTACATCAGAAGCTTTGGAGGGGGTGTTGTTTCACATTATAATGCTACTTTTGTGGTGAATCAGTTCACAGTTGCATCCACCACTTGGGTTAATTTTGATGATGTGGAGGCAATAAGGGCTAAAGTTTCTTATGCAAAGGAAAATGGGCTACTTGGTTACAACGTGTTCCAAGTGGGCAATGACGAAAATTGGGTCCTTTCAAGGGCGGCTCAAGAAGTAGATGAAGAGCATCATAAAAGGAGGTTGCTGATAATTGTTCTGCTTACAACTCTTACTGTCGCACTTCTATTGGGAATATTATTTTGCTACTACCACCCAGGAGCAGCAGCCACTTTTACAAGAATATTATATAAACTAAGATATTTATCAGCAGCTGAAGAAGATCTCGAGGGAAATGCTTCTGATCTGATAGTATTTAGTTATCTCACAATTAAAGTGGCAACAGATAACTTCTCAAAACATAATAAGCTTGGAGAGGGTGGATTTGGATCCGTGTATAAGGGAAAATTACGGAAGGGACAGGAAATAGCTGTAAAAAGACTCTCAGAAACCTCAAATCAAGGCCTTGAAGAGTTCAAAAATGAGATCACACTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTCTGGGTTACTGCACAAAAAGGGATGAGAAGATTCTGATCTATGAATACCTGCCAAACAAAAGCTTAGATTATTTTCTCTTTGATCCAAGGAAATCAATTCTTTTAGACTGGAGCAAGCGTGTCAATATCATTGAAGGGGTTACTCAAGGCCTTCTTTATCTCCAAGAGTATTCAAATTTTACTATAATCCACCGAGATCTTAAAGCTAGTAATGTTTTGTTAGATCATGAGATGAATCCCAAGATATCAGATTTTGGTATGGCTAGAATTTTCAGGAAATATGACCTTGAAGCAAACACAAGCAGGATCGTAGGAACATATGGGTATGTACCACCTGAGTATGTGAGGAAAGGCATATACTCAACCAAGTACGACGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGTGGAAAAAGGACTTCATGTTATTATGGTACAAATGAAAATATGAACCTTTTGGAATATGCATATGAGTTGTGGAGGGAAGGTAGAGGTGTGGAGTTTATTGACCCACCATTGGATGATACAACATCACCTTGTAAAATCATGAGATGCATGCATGTGGCTCTGTTGTGTGTTCAAGAGAACTCTGCAGATAGACCTTCCATGTTAGAAGTTGATTCACTGCTCAAGAATGAATATGCACCTATTGATACTCCCAAAATGCCTGGTTTTTCAATGAAAAAACATGAAGATGAGGAAGAAACATCTCACTGCGGGATCAAACTTTCTTCAATCAATGATGTTACAATTTCTCAACTGGAACCAAGATGA 3330 0.4105 MANSKSFSFLIFTLLTILQLSSFSSAQTVVKGGYWYSDAGLAVSDIDSTHFTHLFCAFADLDTNTNQVTISSSNAPLFSTFTQTVQQKNPSVKTLLSIGGGGGSSLAQAFSTMATQASTRKSFIDSSIQLARNNNFHGLDLDWEYPSSATDKTNFGLLIKEWREAIAQESNDSGKSALLLSAAVSGSDQISSLDNYPVPEISQNLDFVNVMVYDLFIPGGYPDKTQPPAPLENPEGQFSGDEGVTKWINLGLAKNKLAIGLPFYGYSWRLVNADEHGIFESANGAATSDGGDGSMGYSQIRGFISQNGAQTVFNATVVSDYCYYGTTWIGYDDTQSVSTKVTYAKGKGLRGYFVWHVGADYNWVLSQTEAQSWVKAGYYYSGSEISASDIKATLFTHLLCAFAFINSTNYNIFINSSEEHKFSTFTNTVKLQNPSVSTLLSIWGGREDSPVFTSMLNQSSYRKSFIDSSVKTARLYGFQGIDLCGAWPRQDKDLANFGTLLKEWRAAITSEARNSSKPELVLVMAGYYLKASDSLSYPFKSMQMNLDWVHFVAYDYYLPRKDNVTGFHAALYGPSGWDNTDSGIKEWRRGGFSSSKLVIGLPYHGYAWTLVKPGDNSVGKPTSGPAITMDGSMAYKLIKSYIRSFGGGVVSHYNATFVVNQFTVASTTWVNFDDVEAIRAKVSYAKENGLLGYNVFQVGNDENWVLSRAAQEVDEEHHKRRLLIIVLLTTLTVALLLGILFCYYHPGAAATFTRILYKLRYLSAAEEDLEGNASDLIVFSYLTIKVATDNFSKHNKLGEGGFGSVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKRDEKILIYEYLPNKSLDYFLFDPRKSILLDWSKRVNIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDHEMNPKISDFGMARIFRKYDLEANTSRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGTNENMNLLEYAYELWREGRGVEFIDPPLDDTTSPCKIMRCMHVALLCVQENSADRPSMLEVDSLLKNEYAPIDTPKMPGFSMKKHEDEEETSHCGIKLSSINDVTISQLEPR. 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00965 1109 SUPERFAMILY Chitinase insertion domain 264 332 IPR029070 -
Seca12g00965 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 912 924 IPR008271 GO:0004672|GO:0006468
Seca12g00965 1109 SUPERFAMILY (Trans)glycosidases 26 363 IPR017853 -
Seca12g00965 1109 SMART serkin_6 791 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00965 1109 ProSiteProfiles Protein kinase domain profile. 791 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00965 1109 SUPERFAMILY Protein kinase-like (PK-like) 775 1082 IPR011009 -
Seca12g00965 1109 SUPERFAMILY (Trans)glycosidases 376 703 IPR017853 -
Seca12g00965 1109 CDD STKc_IRAK 797 1064 - -
Seca12g00965 1109 PANTHER CHITINASE 5 368 - -
Seca12g00965 1109 SMART 2g34 29 360 IPR011583 GO:0008061
Seca12g00965 1109 SMART 2g34 373 701 IPR011583 GO:0008061
Seca12g00965 1109 SUPERFAMILY Chitinase insertion domain 605 672 IPR029070 -
Seca12g00965 1109 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 373 717 IPR001223 GO:0005975
Seca12g00965 1109 Gene3D Transferase(Phosphotransferase) domain 1 867 1070 - -
Seca12g00965 1109 FunFam Class V chitinase CHIT5b 263 331 - -
Seca12g00965 1109 Gene3D Phosphorylase Kinase; domain 1 756 866 - -
Seca12g00965 1109 Gene3D - 603 672 IPR029070 -
Seca12g00965 1109 Gene3D - 263 331 IPR029070 -
Seca12g00965 1109 FunFam Uncharacterized protein 767 866 - -
Seca12g00965 1109 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 376 IPR001223 GO:0005975
Seca12g00965 1109 Pfam Glycosyl hydrolases family 18 33 360 IPR001223 GO:0005975
Seca12g00965 1109 ProSitePatterns Protein kinases ATP-binding region signature. 797 819 IPR017441 GO:0005524
Seca12g00965 1109 Pfam Glycosyl hydrolases family 18 378 701 IPR001223 GO:0005975
Seca12g00965 1109 CDD GH18_plant_chitinase_class_V 27 366 - -
Seca12g00965 1109 Gene3D Glycosidases 388 702 - -
Seca12g00965 1109 FunFam Uncharacterized protein 867 1071 - -
Seca12g00965 1109 Gene3D Glycosidases 43 360 - -
Seca12g00965 1109 Pfam Protein kinase domain 791 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00965 1109 CDD GH18_plant_chitinase_class_V 371 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00965 Seca-Chr12 9248480 9271005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00965 365 713 Glycoside Hydrolase AT4G19810 45.480 8.04e-93 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g00965 Glyco_hydro_18 1.1e-79 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00965 - - aprc:113847882 1264.21