Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00958 ATGTCCATTAGAAAACCCCCATTCCCTCGTCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGCCCAGCAAATTCTGCGTCATGTGAATGTCTCTCTTCATGATGGAGCAGCGCTTGTGCTAACGGGTGCAAATGGCTCAGGAAAGACAACTTTCTTGCGCATGTTAGCTGGGTTTTCTCGTCCCTCTGCTGGTGAAATCCTATGGAATGGCCACAACATTCAAGAATCTGGAATTTTCCATCAGTATAAGCTTCAGCTTAACTGGGTCTCCCTCAAGGATGCTATTGCCGACAAGTTTACAGTTCTTGAAAATGTTCAATGGTTTGAAATTCTTGAAGGCAAGCAAGGGAAGGCTATGCCTGCACTTGAGTTAATGGGACTAGGAAGACTGGCCAATGAGAAGCCAAGGATGCTGTCTATGGGCCAGCGGAAAAGACTGCAACTTGCCAGATGTCTAGCAATTGATCGCCCCATATGGTTGCTAGATGAGCCTTCAGTTGCATTAGATGATGAAGGTGTAAAGTTACTTGAGTTTATTATTGCAGAACACAGGAAACAGGGAGGAATTGTGATTGTAGCAACTCATTTACCCATTGAGATAGAAGATTCAATGGTCTTGAGGCTGCCACCAAGGTTTCCAAGGAGGATGACTTTTGTGGATATGCTTGACCGGGCAGATATTAGTTAA 690 0.4449 MSIRKPPFPRLLLNNVSCMRNAQQILRHVNVSLHDGAALVLTGANGSGKTTFLRMLAGFSRPSAGEILWNGHNIQESGIFHQYKLQLNWVSLKDAIADKFTVLENVQWFEILEGKQGKAMPALELMGLGRLANEKPRMLSMGQRKRLQLARCLAIDRPIWLLDEPSVALDDEGVKLLEFIIAEHRKQGGIVIVATHLPIEIEDSMVLRLPPRFPRRMTFVDMLDRADIS. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00958 229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 229 IPR003439 GO:0005524
Seca12g00958 229 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 6 223 IPR005895 GO:0017004|GO:0022857
Seca12g00958 229 NCBIfam heme ABC exporter ATP-binding protein CcmA 13 209 IPR005895 GO:0017004|GO:0022857
Seca12g00958 229 Pfam ABC transporter 26 166 IPR003439 GO:0005524
Seca12g00958 229 Gene3D - 8 208 IPR027417 -
Seca12g00958 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 202 IPR027417 -
Seca12g00958 229 SMART AAA_5 35 223 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00958 Seca-Chr12 9180531 9181220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00958 24 207 Calmodulin-binding Proteins AT2G36910 26.368 1.14e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00958 - - cpap:110815669 414.075