Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00953 ATGGCTGGCACTGGACTATTTGCAGAGATTTTAGAGGGAGATGTCTACAAGTACTATGCTGATGGAGAATGGAAGAAATCTACTTCTGGGAAAACTGTTGCTATCATCAACCCCACTACCAGAAAGACTCAATACAAAGTTCAAGCTTGTTCACAAGAGGAGGTTAATAAGGTCATAGATGCAGCAAAATCTGCACAAAAGTCATGGGCAAAGACCCCACTTTGGAAGAGGGCTGAACTTCTTCACAAGGCTGCTGCTATCCTCAAAGAGCACAAAGCTGAAATTGCAGAGTGCCTGGTGAAAGAAATTGCAAAGCCAGCCAAAGATGCAGTTACAGAGGTGGTAAGATCTGGGGATTTGGTCTCTTACTGTGCTGAAGAAGGGGTGAGGATTCTAGGAGAGGGAAAGTTCTTGGTATCAGATAGCTTTCCTGGAAATGAAAGGACAAAATATTGCCTCACGTCCAAGGTCTATTTTCAGCACTTCTTTCCTATATATGCTACTTCACAAGTTACAGTTCATATATTACTGGCTTGTATTCCATTGGGAGTGATTTTAGCCATTCCACCTTTTAACTATCCAGTCAACCTTGCTGTCTCAAAAATTGCTCCTGCACTGATTGCTGGAAATTCCCTTGTCCTTAAGCCTCCAACTCAGGGAGCTGTTTCTGCTCTGCATATGGTTCATTGCTTTCACTTGGCTGGTTTTCCCAAAGGTCTAATCAGCTGTGTTACTGGCAAAGGCTCAGAAATTGGTGACTTTCTTACTATGCATCCAGGAGTGAACTGTATAAGCTTCACTGGTGGAGATACTGGCATTGCAATTTCAAAGAAGGCAGGGATGATTCCTTTGCAAATGGAGTTGGGAGGAAAAGATGCCTGCATTGTACTTGAGGATGCTGACCTGGATTTGGTTGCTGCAAACATTATAAAAGGAGGTTTTTCATACAGTGGTCAGAGGTGCACTGCTGTTAAGGTTGTCCTGGTAATGGAATCGGTTGCTGATGCATTGGTTGAGAAAGTGAAGGCTAAGGTGGCAAAACTAAGTGTTGGGACACCAGAGAATAACAGTGATATCACCCCAGTTGTGTCTGAATCATCAGCTAACTTCATTGAAGGCCTTGTCATGGATGCTAAAGAGAAAGGAGCAACATTCTGTCAGGAGTACAAGAGAGATGGAAATCTCATTTGGCCTTTGCTACTGGACAATGTTAGGCCAGACATGAGAATTGCATGGGAAGAACCATTTGGACCAGTTTTGCCAGTAATTAGGATCAATTCTGTTGAGGAAGGAATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTTTTCACAAAGGATGTCAACAAAGCAATGATGATCAGTGATGCAATGGAAACAGGAACAGTTCAGATAAATTCTGCCCCAGCTCGTGGGCCGGATCATTTTCCCTTTCAGGGTATTAAGGACAGTGGGATTGGATCACAAGGGATTACCAACAGCATAAACATGATGACCAAGATCAAAACAACTGTGATCAACTTACCCAGCCCTTCTTATACCATGGGCTAG 1560 0.4327 MAGTGLFAEILEGDVYKYYADGEWKKSTSGKTVAIINPTTRKTQYKVQACSQEEVNKVIDAAKSAQKSWAKTPLWKRAELLHKAAAILKEHKAEIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKVYFQHFFPIYATSQVTVHILLACIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKAKVAKLSVGTPENNSDITPVVSESSANFIEGLVMDAKEKGATFCQEYKRDGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDVNKAMMISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKIKTTVINLPSPSYTMG. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00953 519 PANTHER ALDEHYDE DEHYDROGENASE 1 518 - -
Seca12g00953 519 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 10 289 IPR016162 GO:0016491
Seca12g00953 519 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 314 325 IPR016160 GO:0016491
Seca12g00953 519 SUPERFAMILY ALDH-like 15 510 IPR016161 GO:0016491
Seca12g00953 519 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 290 514 IPR016163 GO:0016620
Seca12g00953 519 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 290 480 - -
Seca12g00953 519 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 286 293 IPR029510 GO:0016491
Seca12g00953 519 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 303 - -
Seca12g00953 519 CDD ALDH_F11_NP-GAPDH 15 510 - -
Seca12g00953 519 Pfam Aldehyde dehydrogenase family 24 506 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00953 Seca-Chr12 9135020 9140011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00953 1 519 Aldehyde Dehydrogenase Gene Family AT2G24270 86.705 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00953 K00131 - gmx:100789100 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00953 12 9135020 9140011 Seca12g00953 12 9135020 9140011 ECH