Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00952 ATGAACCACTTCGAACCCACTTCCTCCCAAGATGATTTCCTCAAACAAATGCTCTCCAACCTTCCTTCTTCCTCCTGGACCCTCGACCCCAACCCCAAGCCCTTATGGGACGAAACGCCACCTGAGAATGTGCCTTTCCCTTACGATGAACACACCAACTTAGCCTCCAAGTTCCGCAACCACCAGATCAACGATAAGACGGCGGCTCTCATGCTTCTCATGTCCAGAGGCGCCACCGATTCCGGCCTCCTCCAGATGCCGTTGTCGTTGGCCGGCGGAGACTCCGCAAACGACGTCGTTAACGTCTCCTCCTTCAAATCTACTACTCCAGCTGGTGATGGTTCTGTGCAAGCTATGTATAACGGCTTCCCTGGATCTCTCCAGAACGCCGTTCAACCTTCCGACCAAACTCACCATTTTCAACCTCCTCAGGGTCAGGGTCAGGGTCAGAGCTTTGGAGCTTCGCCGAGCGCAACGAACCAGGCTCCGGTCGGTGGTGCACCTGGTCAGCCGAAGCAGAGGGTCAGGGCAAGGAGAGGTCAAGCCACCGACCCACACAGCATCGCTGAAAGGTTAAGAAGGGAAAGAATCGCAGAGAGAATGAAGGCCTTGCAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGACTATGTGAAGTTCCTGCAGCTCCAAGTCAAGGTATTGAGCATGAGCAGATTGGGCGGAGCAGCTGCTGTGGCTCCCCTTGTTGCTGACATGTCCTCAGAGGGAGGCGGTGACTGCGTTCAAACCAACGCCAACACAAAAACGGCGTCGTCGTCGAATGACAGCCTCGTGATGACGGAGCAGCAGGTGGCGAAGCTCATGGAGGAAGATATGGGCTCAGCCATGCAGTACCTACAGGGCAAAGGACTCTGCCTCATGCCTATTTCTCTTGCCACCGCCATCTCCACAGCCACGTGTCACACCAGGAACACCTTGATCAACGCCACAAATAACAACATCAACGGTGGTGATGGGCCCCCTTCTCCCGGCATGTCCGTGAACAGCATCGTCAAAGACGCAGCTTCCGTTTCCAAGTAG 1089 0.55 MNHFEPTSSQDDFLKQMLSNLPSSSWTLDPNPKPLWDETPPENVPFPYDEHTNLASKFRNHQINDKTAALMLLMSRGATDSGLLQMPLSLAGGDSANDVVNVSSFKSTTPAGDGSVQAMYNGFPGSLQNAVQPSDQTHHFQPPQGQGQGQSFGASPSATNQAPVGGAPGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCVQTNANTKTASSSNDSLVMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNTLINATNNNINGGDGPPSPGMSVNSIVKDAASVSK. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00952 362 MobiDBLite consensus disorder prediction 121 191 - -
Seca12g00952 362 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 318 - -
Seca12g00952 362 SMART finulus 187 236 IPR011598 GO:0046983
Seca12g00952 362 MobiDBLite consensus disorder prediction 121 166 - -
Seca12g00952 362 FunFam Transcription factor bHLH66 178 243 - -
Seca12g00952 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 241 IPR036638 GO:0046983
Seca12g00952 362 Gene3D - 176 238 IPR036638 GO:0046983
Seca12g00952 362 MobiDBLite consensus disorder prediction 177 191 - -
Seca12g00952 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983
Seca12g00952 362 Pfam Helix-loop-helix DNA-binding domain 186 231 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00952 Seca-Chr12 9123191 9126830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00952 167 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 70.968 8.39e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g00952 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00952 - - psat:127138414 444.121