Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00950 ATGAGAAACCATTGGTTCACCCCAACTGAGGTAGGTGCCTCAACCAAACGCAGAACCGGCGGCAGAAATTGCCACCGCAAACACGTCGAAGACGGCAGTAACAGCGAGGGGCATTCAACTCTGCTGCATGGGAAATACGAGCTAGGTCGGATTTTGGGCCACGGAACCTTCGCGAAGGTGTATCACGCGCGGAACTTGCAAACGGGGAAGAACGTCGCGATGAAGGTAGTTGCGAAGGAGAAGGTCATAAAAGTTGGAATGATGGAGCAGATCAAGAAAGAGATCTCCGTCATGAAGATGGTGAAACACCCGAATATTGTTGAGCTTCACGAGGTTATGGCTAGCAAATCCAAGATCTACATCGCCATGGAGCTTGTTCGTGGTGGTGAGCTCTTCAACAAGGTAGCCAAAGGTCGTTTGAAAGAAGACCTAGCTAGAGTCTATTTTCAGCAGTTAATCTCCGCCGTTGATTTCTGCCACAGCCGCGGCGTTTACCACCGTGACCTCAAGCCGGAGAATCTTCTCCTCGACGAAGATGGGAACCTTAAGGTCTCTGATTTTGGTCTAAGCACTTTCTCTGGCCAGGATGGATTGTTGCACACCACGTGCGGCACGCCGGCGTATGTTTCGCCGGAGGTGATTGCGAAGAAAGGCTACGACGGTGCTAAGGCTGATATTTGGTCTTGTGGAGTCATCCTCTACGTGCTTCTTGCAGGGTTTTTACCTTTTCAGGATGATAATTTGGTTGCTATGTATAAGAAGATTTACAGAGGTGACTTTAAATGTCCACCTTGGTTCTCTGTGGAAGCTCGAAGGCTTGTTACGAAGCTTCTAGATCCGAATCCGAATACTCGAATAACAATTTCCAAGATCATGGACTCGTCTTGGTTCAAGAAACCGGTGCCGAAGAGCATGATGACGGCGAGGAGGAAAGAGGAAGAGGCGTTTGATTTTGAGGAGGAGAAGTCGAATGTGCCAACCACGATGAACGCGTTTCACATAATTTCGCTTTCGGAAGGGTTTGATTTGTCGCCGTTGTTTGAGGAGAAGAAGAGAGAGGAGAGGGAGGAGCTGAGATTCGCGACGGCGGGGACGCCGAGCAGAGTGATATCGAGATTGGAGGAGGTGGCGAAGGCGATGAAGTTTGATGTGAAGAGTAGTGATACGAAAGTGAGGCTTCAGGGGCAAGAGCGTGGGAGGAAGGGGAAGTTGGCTATTGCGGCGGATATTTACGCCGTGACGCCGTCGTTTATGGTGGTGGAGGTGAAGAAGGATAGTGGTGACACTTTGGAGTATAATCAGTTCTGCAGCAAAGAGCTTCGTCCTGCGCTTAAAGACATCTTTTGGACTTCCTCTGAGAATTCGACGCCTGCAGCTTGA 1380 0.4986 MRNHWFTPTEVGASTKRRTGGRNCHRKHVEDGSNSEGHSTLLHGKYELGRILGHGTFAKVYHARNLQTGKNVAMKVVAKEKVIKVGMMEQIKKEISVMKMVKHPNIVELHEVMASKSKIYIAMELVRGGELFNKVAKGRLKEDLARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEDGNLKVSDFGLSTFSGQDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYRGDFKCPPWFSVEARRLVTKLLDPNPNTRITISKIMDSSWFKKPVPKSMMTARRKEEEAFDFEEEKSNVPTTMNAFHIISLSEGFDLSPLFEEKKREEREELRFATAGTPSRVISRLEEVAKAMKFDVKSSDTKVRLQGQERGRKGKLAIAADIYAVTPSFMVVEVKKDSGDTLEYNQFCSKELRPALKDIFWTSSENSTPAA. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00950 459 Pfam Protein kinase domain 46 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00950 459 MobiDBLite consensus disorder prediction 1 38 - -
Seca12g00950 459 CDD CIPK_C 330 445 - -
Seca12g00950 459 FunFam Non-specific serine/threonine protein kinase 324 449 - -
Seca12g00950 459 MobiDBLite consensus disorder prediction 1 16 - -
Seca12g00950 459 FunFam Non-specific serine/threonine protein kinase 39 331 - -
Seca12g00950 459 Pfam NAF domain 326 385 IPR004041 GO:0007165
Seca12g00950 459 ProSitePatterns Protein kinases ATP-binding region signature. 52 79 IPR017441 GO:0005524
Seca12g00950 459 Gene3D Phosphorylase Kinase; domain 1 43 127 - -
Seca12g00950 459 CDD STKc_SnRK3 45 296 - -
Seca12g00950 459 SMART serkin_6 46 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00950 459 Gene3D Transferase(Phosphotransferase) domain 1 128 325 - -
Seca12g00950 459 FunFam Non-specific serine/threonine protein kinase 37 125 - -
Seca12g00950 459 SUPERFAMILY Protein kinase-like (PK-like) 43 307 IPR011009 -
Seca12g00950 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Seca12g00950 459 ProSiteProfiles Protein kinase domain profile. 46 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00950 459 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 37 446 - -
Seca12g00950 459 ProSiteProfiles NAF domain profile. 324 348 IPR018451 GO:0007165
Seca12g00950 459 Gene3D Kinase associated domain 1, KA1 326 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00950 Seca-Chr12 9087337 9088810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00950 27 458 CBL-interacting serine-threonine protein kinases AT4G30960 74.607 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca12g00950 Pkinase 8.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00950 - K07198 gmx:100781111 726.472