Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00947 ATGCTCCGCAAATTGTTCTTTCGCAAGCCTCCTGATGGCCTCCTTGAGATCTGCGAGAGAGTTTACGTTTTTGATTGCTGCTTCACCACTGATGCTTGGAATGAAGAGAATTACAAAGTGTACATGGATGGAATAGTTGGTCAACTTAGAGAGAACTTGCCTGATGCTTCCATTCTGGTTTTCAATTTCCGTGAGGATCAGACCAAGAGTCTGATGGCAAACGTCTTGTCTGAGTATGACATTACTATAATGGACTATCCCAGGCACTATGAAGGTGTCCCCGTTCTCAAAATGGAGCTCATCCACCACTTTTTAAGGTCTGGTGAAAGTTGGCTCTCGCTTGGGCACCATAATGTGTTGTTGTTGCATTGTGAACGTGGTGGTTGGCCTGTTTTGGCTTTCATGTTGGCTGCATTGTTGATTTATCGAAAGGTTTATACTGGGGAGCAGAGGACTTTGGATATGCTTTACAAACAGGCTCCCAACGAGCTTTTGCATTTGTTGACACCGTTGAATCCCATCCCTTCCCAATTGAGATATCTGCAGTATGTTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCCCTGGACAGGGCACTCATGTTGGACTGCATCATTCTCAGATTCATCCCAAATTTTGATGGGGAAGGTGGTTGTCATCCAGTGTTTAGAATTTTTGGACAGGATCCTTTTAGTGCAGATAAAAATCCTAAAATGTTGTACTCAATGCCAAAGAAAAGCAAAACTTTCCGGGCTTACAAGCAGGGAGAGTGTGAACTAATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTCGTGATAGAGAGCATTAACTTGAATGGTGACATGGAACGTGAAATGATGATGTTTCGAGTCATGTTCAACACGGCTTTTGTTAGATCTAATATTCTGATGCTTAATCGGGATGAAATTGACATCTTATGGGATGCTAAAGACCACTTTCCAAAAGATTTCAGAGCTGAGATCCTTTTCTCAGAGATCGATGCTGCTGCAGCAGTTATTGCCAGTGGTACCTCCTCATGCTTTGAGGAGAAGGAGGGACTGCCGATGGAAGCATTTGCCAAGGTTCAAGAGATCTTCAGCCATGTGGACTGGTTGAACCCCGGGGCAGATGCTGCACTAAATGTGCTCCAACAGATAAGTGCTTCGGCTATCATGAACGACAAGTTGGATACAGTTTCTGATCAGTATATGGAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCAGGGGAATTCAAATGAAGCACTACAGTCTTTGTCCTCAACTAAGCGATCCCCAAATAATGATACAAGTAGAAAAGAAGATAAGACAAAAAAGATTGATGCTGCTACTCCAAAGCGGTATTTGGAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCAGGGGAATTCAAATGAAACAATACAGTCTTTGTCCTCAACCAGGCGATCCCCAAATTATGATACGAGTAGAAAAGAGGATAAGACAAACAAGGTTGATGCTACTCCACAGCTGCATATGGAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCAGGGGAGTTCAAATGAAGCAATACAGTCTCTGTCCTTAACTAAGCGATCCCCAAATAGTGATATGGATAGAAAAGAGGATAAGACAAAAAAGGTTGATGCTACTCCACAGCAGTATTTGGAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCAGGGGAATTCAAATGAATCAATACGATCTTTGTCCTCAGCCAAGCCATCCTCAAATAATGATACGAGTAGAAAAGAGGATAAGATAGACAAGGTTGATGCTACTCCACAGCGACACATGGAAACTGGCACTTCATTGCATGATACAGGTTCTAAAATGTCTCAGGGGAATTCAAATGAATCAATACAATCTTTATCCTCAACCAAGCGATCAACAAATATTGATACGGGTAGAAAAGAGGATAAGACAAACAAGGTTGATGCTACACCACAGCTGCATGTCCAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCAGGGGAGTTCAAATGAAGCAATACAGTCTCTGTCCTCAACCACGCGATCCCCGAGTAATGATATGAATAGAAAAGAAGATAAGACCAAAAAGGTTGATGCTACTCCACTGCAGTATGTGAAAACTGGCACTTCATTGCATGAAACAGAGTCGACAGTTCTAGACAGAAAACTGCAGGTGTCTGATCTTGCCTCATCTGGTTCTGTGGATACTTCTCTTTCCCCTGGAACACGGCCTCTGCGGCCTCCCTCAACTAATCGTGCTAAAGAAGTCCATGATTCTCCTCCCCACTCGGAATCACCTCCTCATAGTATTTTGCCTTCACAATCAAGACAACAATCACAAGACAAAAGTCATTCACCTATTTCTAGCTCTACACCTGGGATCAGATTGTCATCTGGTTCTCATAGTAAGTCACCAGCTGACGCCATTTCCCATCCGTCAGTTTCATCAGTTACTTCAATCCAGTCATCCCCTTCACTTTCTTCCAAAACTCCCGGGAATGAGATTCCATCTGTTAGAACAAGACTTGAGTCTTCCCCTCCACCACCTCCAACTCCACCAGCTCCTCCTACCCCTCCACTAAAAGATCATAAACCAGTTAGAACTGGACCTCCACCTCCACCTCCACCACCTCTTCTGAAGAAAGAACCACATGTAGCTGGACCCGTTCCTCCTCCTCCTCCTCTACCATCTCCTATGAATGAGGAGCCACGTGTTAGAGATGGACCCCCTCCTCCCCCTCCACCTCCTCTAAAAGAGGAGCAACCTGTTACATTTAAGCCCCCACCACCTCCCCCACCTCCTCGACTTTCTGGGGAAGCTGCAGGTCCTACTACAGCACCGCCGCCGCCGCCACCACCACCACTTTCAACTGCAGCACGTTCCTCTGACCACCCTAATCCGTCATTACAAAAGTCTTCTGCTCCTGCAGCACCAGCTGCTCCACCACCTCCAATGCCATTTGATAAAGGAGGTCTAAAACCAGGTGGTGCTTTTCCAAGGTCTATTCTTGCGGGTAATGATGGAAATAATGTGTCAGGCACAACAGGACCTCGATCTAGTTCACCTACCGGCTCAAAGGGACGACTTCTATCACGTACGATTGGCTCAAAGAACAACACCAAAAAGTTGAAGCCATTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCTGAGACACAGAAATCTGGTGAAGCTTCCAAGGCTCCAGAGATTGATATGACTGAGCTTGAGAATCTCTTCTCAGCAGCAGTCCCAAGTTCAGGTCCTGCCAAGAAGTCAAATGGCCAAAACTCAGTCAAGCCTAAATCTGATAAAGTGCAACTGATCGAGCATAGGCGAGCATATAATTGTGAAATCATGCTTTCACAAGTGAAGGTGCCATTGCATGATTTAATGAGCTCAGTGTTAGCACTGGAAGATTCAGCGCTAGACACTGATCAGGTTGAAAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAAGTAATCAAGGGCTATAACGGGGAAAAGGAGAAGTTAGGGAGATGTGAACAGTTCTTCATGGAGTTGATGAAAGTACCACGAGTAGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAGTTCCAGTCTCAGGTTTCTGATCTTAGAAATAGCCTTAATGTTATCAGGAATTCTGTCAAATTGAAGAGAGTTATGCAAACAATACTTTCTCTAGGAAATGCTTTGAACCAAGGAACTACCAGGGGTTCTGCTATTGGATTCAGATTAGATAGCCTTCTTAAACTCACCGAAACACGTGCACGGAATAACAAGATGACTCTCATGCACTATCTTTGTAAGGTGCTAGCTGACAAATTACCAGAAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCTAAGGTCCAACTGAAGTTTCTGGCAGAGGAGATGCAAGCTATAAACAAAGGATTAGAGAAAGTTGTGCAGGAATTATCAACCTCTGAAAATGATGGTCCGATATCAGAAACTTTCCGCAAGAAATTGAAAGAGTTCCTCTGTTCTGCTGAAGCTGAAGTCCGTTCATTGGCTTCACTATATTCTGGCGTGGGTAGGAAAGTGGATGCATTGATTCTTTATTTTGGTGAAGATCCATCTCGCTGCCCATTTGAGCAAGTTGTGACAACTTTGTTGAACTTCACTAGAATGTTCAACAAATCCCATGAAGAAAACTGCAAGCAGCTAGAGCTTGAAATGAAGAAAACGGCAGAAAGTGAGAAAAAAAAATGTGAATCAGAAAGGATATTACCTACGGCAATTCGGACTGGCAATGTCAAATAA 4404 0.4369 MLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWNEENYKVYMDGIVGQLRENLPDASILVFNFREDQTKSLMANVLSEYDITIMDYPRHYEGVPVLKMELIHHFLRSGESWLSLGHHNVLLLHCERGGWPVLAFMLAALLIYRKVYTGEQRTLDMLYKQAPNELLHLLTPLNPIPSQLRYLQYVSRRNVALDWPPLDRALMLDCIILRFIPNFDGEGGCHPVFRIFGQDPFSADKNPKMLYSMPKKSKTFRAYKQGECELIKIDINCHIQGDVVIESINLNGDMEREMMMFRVMFNTAFVRSNILMLNRDEIDILWDAKDHFPKDFRAEILFSEIDAAAAVIASGTSSCFEEKEGLPMEAFAKVQEIFSHVDWLNPGADAALNVLQQISASAIMNDKLDTVSDQYMETGTSLHETGPKMSQGNSNEALQSLSSTKRSPNNDTSRKEDKTKKIDAATPKRYLETGTSLHETGPKMSQGNSNETIQSLSSTRRSPNYDTSRKEDKTNKVDATPQLHMETGTSLHETGPKMSQGSSNEAIQSLSLTKRSPNSDMDRKEDKTKKVDATPQQYLETGTSLHETGPKMSQGNSNESIRSLSSAKPSSNNDTSRKEDKIDKVDATPQRHMETGTSLHDTGSKMSQGNSNESIQSLSSTKRSTNIDTGRKEDKTNKVDATPQLHVQTGTSLHETGPKMSQGSSNEAIQSLSSTTRSPSNDMNRKEDKTKKVDATPLQYVKTGTSLHETESTVLDRKLQVSDLASSGSVDTSLSPGTRPLRPPSTNRAKEVHDSPPHSESPPHSILPSQSRQQSQDKSHSPISSSTPGIRLSSGSHSKSPADAISHPSVSSVTSIQSSPSLSSKTPGNEIPSVRTRLESSPPPPPTPPAPPTPPLKDHKPVRTGPPPPPPPPLLKKEPHVAGPVPPPPPLPSPMNEEPRVRDGPPPPPPPPLKEEQPVTFKPPPPPPPPRLSGEAAGPTTAPPPPPPPPLSTAARSSDHPNPSLQKSSAPAAPAAPPPPMPFDKGGLKPGGAFPRSILAGNDGNNVSGTTGPRSSSPTGSKGRLLSRTIGSKNNTKKLKPLHWLKLSRAVQGSLWAETQKSGEASKAPEIDMTELENLFSAAVPSSGPAKKSNGQNSVKPKSDKVQLIEHRRAYNCEIMLSQVKVPLHDLMSSVLALEDSALDTDQVENLIKFCPTKEEMEVIKGYNGEKEKLGRCEQFFMELMKVPRVESKLRVFSFKIQFQSQVSDLRNSLNVIRNSVKLKRVMQTILSLGNALNQGTTRGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKVLADKLPEVLDFSKDLANLEPAAKVQLKFLAEEMQAINKGLEKVVQELSTSENDGPISETFRKKLKEFLCSAEAEVRSLASLYSGVGRKVDALILYFGEDPSRCPFEQVVTTLLNFTRMFNKSHEENCKQLELEMKKTAESEKKKCESERILPTAIRTGNVK. 1468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00947 1467 MobiDBLite consensus disorder prediction 621 655 - -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 656 670 - -
Seca12g00947 1467 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1059 1451 IPR015425 -
Seca12g00947 1467 Gene3D Formin, FH2 domain 1060 1436 IPR042201 -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 671 710 - -
Seca12g00947 1467 Pfam Formin Homology 2 Domain 1064 1425 IPR015425 -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 1031 1066 - -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 794 866 - -
Seca12g00947 1467 Coils Coil 1426 1446 - -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 711 725 - -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 410 1067 - -
Seca12g00947 1467 SMART it6_source 409 1467 IPR015425 -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 564 602 - -
Seca12g00947 1467 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 335 IPR035892 -
Seca12g00947 1467 Pfam C2 domain of PTEN tumour-suppressor protein 198 334 IPR014020 -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 747 772 - -
Seca12g00947 1467 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 11 185 IPR029021 -
Seca12g00947 1467 PANTHER FORMIN-J 935 1452 - -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 868 984 - -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 494 509 - -
Seca12g00947 1467 Coils Coil 1332 1352 - -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 410 438 - -
Seca12g00947 1467 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1134 1445 - -
Seca12g00947 1467 Gene3D Protein tyrosine phosphatase superfamily 13 196 IPR029021 -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 1113 1135 - -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 439 457 - -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 547 563 - -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 985 999 - -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 510 546 - -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 1117 1133 - -
Seca12g00947 1467 SMART PTEN_C2_2 195 334 IPR014020 -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 603 620 - -
Seca12g00947 1467 Gene3D - 197 337 - -
Seca12g00947 1467 ProSiteProfiles C2 tensin-type domain profile. 197 335 IPR014020 -
Seca12g00947 1467 MobiDBLite consensus disorder prediction 468 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00947 Seca-Chr12 9012569 9025018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00947 1 493 Protein tyrosine phosphatase (PTP) family AT5G58160 57.564 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00947 - - mdm:103424784 1348.18