Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00942 ATGGGTTTGGGAGTATTTGGATCTGTTCTGGTTTTGACACTCTTGTTCAAGCACTTGGCCTCTCAGCAACCAAATACTGATGAGTTCTTTGTGTCTGAGTTCTTGAAGAAGATGGGTGTAACATCTTCCCAAGCATACAACTTTTCTGGTTCTGTTTGTTCATGGCAAGGGGTTTCCTGTGATGTTAATAGAGAACATGTTGTTGACTTGGTGCTTTCTGGTATTGGCCTTTCTGGTCCTATTCCTGATACCACCATAGGAAAGCTCACCAAACTTCAAACTTTGGATCTTAGCCACAACAACATCACTGACTTGCCTTCAGATTTCTGGAGTTTAAGCTCTCTCAAGAGCCTTAACCTCTCCTCCAATCAGATTTCTGGTTCATTGAAAAACAACATTGGCAACTTTGGTTTGCTAGAAAACTTTGACTTGTCCAGCAACAATTTCTCTGAGGAAATTCCTGAAGCTATGAGCTCCCTTGTGAGTTTGAGGGTCCTCAAACTTGACCACAACAGGTTTGCTCAGAGCATACCTTCTGGGATTCTCAAGTGCCAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAGCTGAATGGAACACTTCCTGATGGTTTTGGTGCTGCTTTCCCTAAGCTTAAGACCTTGAACCTTGCTGGGAATAACATCTATGGTCGTATTTCTGATATTTCTGGCTTAAAGTCCATTGTGAGTCTCAACTTATCAAGCAATTCATTTCAGGGTTCTGTCATGGGTGTGTTTCAGGAAAAGTTGGAGGTCTTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTCCTCAGGTACAGTACACCTCTAATTACAATTGGTCTCATTTAGTGTATCTGGATTTGTCAGAGAATCAGCTTAGTGGGGAAATTTTCCAAAATTTGAATGAGTACTTGAATCTAAAGCACCTTAATCTTGCACACAATAGATTTACCAGACAGAAATTCCCACAGATTGAAATGCTTCCAGGATTGGAATATCTGAACTTGTCAAAAACTAGTCTTGTTGGTCACATTCCTTATGAAATCTCAAAGTTGATTAATTTGAATGCACTTGATCTTTCTATGAATCATCTTGATGGGAGAATCCCCTTACTGAGGAATAAACACCTCCAAATTCTTGACCTTTCATACAACAATTTGAGTGGAGCAGTCCCTCAATCTGTCTTGAAGAAACTCCCTTGGATGGAGAAATACAACTTCTCTTACAATAACTTAACCCTTTGTGCTTCAGATATCAAACCTGATATCTTGCAAACAGCATTCTTTGGATCAGTGAACAGTTGCCCACTTGCTGCAGACCCACACCTTTTTAGAAGAAAAGACACTGGACATAAGGGAATGAAGCTGGCTCTAGTATTGACCTTCTCAATGATTTTTATACTTGCTGGGCTTTTGTTTCTAGCATTTGGTTGCAGAAGGAAAACAAAAATGTGGGAAGTTAAGCAAAGTTCATACAAAGAAGAACAGAACATTTCAGGTCCCTTTTCCTTCCAAACAGATTCAACAACTTGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATATTTGAGAAGCCATTGTTGAATATTACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTAGCTGAAGGAAAATTTGGACCTGTCTATAGAGGCTTTCTTCCTGGAGGTATTCATGTAGCAGTTAAAGTCTTGGTTGTTGGGTCTACATTGACAGATGAAGAAGCTGCAAGAGAGCTTGAGTTTCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTTTAACTGGATATTGTGTAGCTGGGGATCAAAGGATTGCTATATATGATTACATGGAAAATGGGAACTTGCAAAATCTGCTTTATGACTTGCCACTTGGAGTGCACAGCACAGATGACTGGAGCACAGACACATGGGAAGAAGCTGACAATAATGGGATTCAAAATGTTGGTTCTGAAGGGTTACTCACAAGTTGGAGATTTCGTCACAAGATTGCTCTTGGCACTGCAAGAGCATTGGCATTTCTACATCATGGATGCTCACCTCCAATAATTCATAGAGCTGTTAAAGCTAGCAGTGTTTATTTGGACTATGACTTGGAACCAAGGTTGTCTGATTTTGGGTTGGCTAAGATTTTTGGAAGTGGGTTGGATGATGAGATTGCAAGTGGTTCACCTGGTTATGTTCCACCAGAGTTTGCTCAACCAGATTTTGACACCCCAACAACAAAATCTGATGTGTACTGTTTTGGGGTTGTTCTCTTTGAGCTACTAACCGGAAAGAAGCCAGTGGAAGATGATTACCCTGATGATAAAGATGCAACCTTGGTAAGTTGGGTCAGAGGATTGGTAAGGAAAAACCAAGGTTCAAGAGCTATTGATCCTAAAATCCGTGATACAGGACTAGATGAACAAATGGAAGAGGCTCTTAAGATTGGTTATCTATGCACTGCTGACTTACCCTCCAAGCGACCAACCATGCAGCAGATAGTTGGACTTCTAAAGGACATTGAACCTACAGCTAGTTAG 2562 0.4071 MGLGVFGSVLVLTLLFKHLASQQPNTDEFFVSEFLKKMGVTSSQAYNFSGSVCSWQGVSCDVNREHVVDLVLSGIGLSGPIPDTTIGKLTKLQTLDLSHNNITDLPSDFWSLSSLKSLNLSSNQISGSLKNNIGNFGLLENFDLSSNNFSEEIPEAMSSLVSLRVLKLDHNRFAQSIPSGILKCQSLVSIDLSSNQLNGTLPDGFGAAFPKLKTLNLAGNNIYGRISDISGLKSIVSLNLSSNSFQGSVMGVFQEKLEVLDLSRNQFQGHIPQVQYTSNYNWSHLVYLDLSENQLSGEIFQNLNEYLNLKHLNLAHNRFTRQKFPQIEMLPGLEYLNLSKTSLVGHIPYEISKLINLNALDLSMNHLDGRIPLLRNKHLQILDLSYNNLSGAVPQSVLKKLPWMEKYNFSYNNLTLCASDIKPDILQTAFFGSVNSCPLAADPHLFRRKDTGHKGMKLALVLTFSMIFILAGLLFLAFGCRRKTKMWEVKQSSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVHSTDDWSTDTWEEADNNGIQNVGSEGLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIASGSPGYVPPEFAQPDFDTPTTKSDVYCFGVVLFELLTGKKPVEDDYPDDKDATLVSWVRGLVRKNQGSRAIDPKIRDTGLDEQMEEALKIGYLCTADLPSKRPTMQQIVGLLKDIEPTAS. 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00942 853 SUPERFAMILY L domain-like 46 418 - -
Seca12g00942 853 ProSiteProfiles Leucine-rich repeat profile. 211 233 IPR001611 GO:0005515
Seca12g00942 853 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Seca12g00942 853 Pfam Leucine rich repeat 186 244 IPR001611 GO:0005515
Seca12g00942 853 PRINTS Leucine-rich repeat signature 92 105 - -
Seca12g00942 853 PRINTS Leucine-rich repeat signature 112 125 - -
Seca12g00942 853 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Seca12g00942 853 ProSiteProfiles Protein kinase domain profile. 547 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00942 853 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Seca12g00942 853 Gene3D Ribonuclease Inhibitor 179 277 IPR032675 -
Seca12g00942 853 Pfam Protein tyrosine and serine/threonine kinase 551 843 IPR001245 GO:0004672|GO:0006468
Seca12g00942 853 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
Seca12g00942 853 SUPERFAMILY Protein kinase-like (PK-like) 524 845 IPR011009 -
Seca12g00942 853 FunFam Calmodulin-binding receptor kinase CaMRLK 255 373 - -
Seca12g00942 853 SMART LRR_typ_2 89 111 IPR003591 -
Seca12g00942 853 SMART LRR_typ_2 232 255 IPR003591 -
Seca12g00942 853 SMART LRR_typ_2 377 400 IPR003591 -
Seca12g00942 853 SMART LRR_typ_2 112 136 IPR003591 -
Seca12g00942 853 SMART LRR_typ_2 160 184 IPR003591 -
Seca12g00942 853 Gene3D Transferase(Phosphotransferase) domain 1 623 852 - -
Seca12g00942 853 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Seca12g00942 853 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 231 848 - -
Seca12g00942 853 FunFam Nuclear pore complex protein NUP107 29 179 - -
Seca12g00942 853 Gene3D Ribonuclease Inhibitor 278 428 IPR032675 -
Seca12g00942 853 Pfam Leucine Rich repeat 376 391 IPR001611 GO:0005515
Seca12g00942 853 Pfam Leucine Rich repeat 283 298 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00942 Seca-Chr12 8956088 8958649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00942 39 848 Receptor kinase-like Gene Family AT5G07280 32.295 1.11e-113 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Seca12g00942 PK_Tyr_Ser-Thr 6.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00942 - - gmx:100797738 1494.95