Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00941 ATGTCGGACGAAGAGCACCACTTCGATTCTCAGGCAGACGCTGGAGCGTCGAAGACTTATCCTCAGCAAGCTGGTACCATTCGCAAGAATGGCTACATCGTCATCAAGTCCAGGCCTTGCAAGGTTGTTGAAGTTTCTACCTCCAAAACAGGAAAGCATGGACATGCAAAGTGCCACTTTGTTGCAATTGATATTTTCAATGGGAAAAAGCTTGAGGATATTGTTCCTTCATCCCACAACTGTGATGTTCCGCATGTGACACGCACTGACTATCAGCTGATTGATATATCTGAAGATGGTTTTGTAAGTTGTCTTTTACTTCCGACACTGGAGGTGTCATGGAATACAATTATGTTGAGGCTTGTAAAATGA 372 0.4382 MSDEEHHFDSQADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSCLLLPTLEVSWNTIMLRLVK. 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00941 123 PIRSF Transl_init_eIF5A 1 118 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca12g00941 123 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Seca12g00941 123 Gene3D - 1 85 IPR014722 -
Seca12g00941 123 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Seca12g00941 123 Gene3D - 86 109 IPR012340 -
Seca12g00941 123 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 105 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca12g00941 123 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Seca12g00941 123 MobiDBLite consensus disorder prediction 1 23 - -
Seca12g00941 123 NCBIfam translation initiation factor IF-5A 17 109 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00941 Seca-Chr12 8944349 8947355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00941 1 105 Eukaryotic Initiation Factors Gene Family AT1G13950 91.429 2.81e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00941 K03263 K02180 gmx:100305510 214.157