Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00940 ATGGCTGAGCATCGCAGCTCCGAAGCACCTCTCGCAGCGGGAGCACAAGAGCTTCGCCGGAAAAGAGTCGATTCAGAAGGTGACGATGATGGAAACCGTGAAGAAGACGAGAGAGAAGAGATAGAGGAACGAGTCGGTGAATCGCCGCCCGCCACCGAGTCGCAACGCGGCGAGTTACGTAGTTCTAATGGACCTCCGGTAGAGTCCAATTCAGAAACCCTAGCTGCTGTTCCTTCTTCGGTTTTGCAGGATCGGAGTGCCGATTTGCAGGGGAGTGCTACTACTTTGAATTCGAGTGGCAAAGCCGAAAGTAAGGACACAGTTCGACCTCCTGAAAAGGAAATTATTGCAAGAGAAGCAGCGCAGGCACCTCCAACTCTGACAGAAAATCAGCTTCAGGTGTCTATGTCTTCAACTCCGTCGTCTGAATTATCTCCAAATTCTGTTACACAATCTTTATCACCTGTCCCTAGTCCAACTATACAAAAACAGAAAATGTCTCCTCCAAAGGTTAATAATATGCACGCGGCAGAAGTAGAAAAAAAATTTCCTTCTGGTGGTAAAACCTTATCTGCAATTTCTGTTGCAAGGACATCAGCATCTGATGGATACAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACTCATTCAAACTGTAGTGCTAAGAAGATTGAATGCTGTGATCATTCAGGTCATGTGATAGAGATTGTTCATAAGAGTGAACACAGTCATGATCCCCCACGGAAGACTAATTCCATTAGGGAAAGTAAGGTTGTGTCTTCCAATGAACCTACTGTAAAGAACAGTGTTCCTGAGCAGCATACCAGAGTTATGAAGGATTCTGATCCGTCCATTTCTTCAAAAGCTCTACAAGAAGTACCTTGCATTTCTGAAAAGAAACAACAAAACTCATCTAATATCAGTGATAATGGTAAAATTATTTTGAAGGAGGATCTTGTAAATGAACCAGAGCCAAAAAAAAGGCAAGTTTGCATATGA 1035 0.4406 MAEHRSSEAPLAAGAQELRRKRVDSEGDDDGNREEDEREEIEERVGESPPATESQRGELRSSNGPPVESNSETLAAVPSSVLQDRSADLQGSATTLNSSGKAESKDTVRPPEKEIIAREAAQAPPTLTENQLQVSMSSTPSSELSPNSVTQSLSPVPSPTIQKQKMSPPKVNNMHAAEVEKKFPSGGKTLSAISVARTSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSNCSAKKIECCDHSGHVIEIVHKSEHSHDPPRKTNSIRESKVVSSNEPTVKNSVPEQHTRVMKDSDPSISSKALQEVPCISEKKQQNSSNISDNGKIILKEDLVNEPEPKKRQVCI. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00940 344 Pfam WRKY DNA -binding domain 202 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00940 344 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 68 310 IPR044810 GO:0003700
Seca12g00940 344 Gene3D WRKY domain 187 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00940 344 MobiDBLite consensus disorder prediction 250 323 - -
Seca12g00940 344 MobiDBLite consensus disorder prediction 250 264 - -
Seca12g00940 344 ProSiteProfiles WRKY domain profile. 195 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00940 344 MobiDBLite consensus disorder prediction 294 323 - -
Seca12g00940 344 SUPERFAMILY WRKY DNA-binding domain 197 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00940 344 SMART WRKY_cls 200 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00940 344 MobiDBLite consensus disorder prediction 124 169 - -
Seca12g00940 344 MobiDBLite consensus disorder prediction 265 284 - -
Seca12g00940 344 MobiDBLite consensus disorder prediction 54 104 - -
Seca12g00940 344 MobiDBLite consensus disorder prediction 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00940 Seca-Chr12 8935647 8939463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00940 135 340 WRKY Transcription Factor Family AT4G30935 44.762 4.73e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g00940 WRKY 4.9e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00940 - - gmx:100127377 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00940 12 8935647 8939463 Seca12g00940 12 8935647 8939463 ECH