Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00939 ATGAAGAAAAGTGACTTAACGAACTTGGATTCTCCCGTAAAACCTGGAAAGAAACCCAAGCTTGTTGTACACGCAGCAGGGGATGTGGGAATATCAGGCGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGGAATCAACATCCCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGTCCGAAAGCACATTGAGAATGCTGTAGACAACTCAAATGCTGTCACTATAACATACAAGGGTGTACATGACCATGACATGCCTGTGCCCAAGAAACGACATGGCCCACCAAGTGCTCCTCTTGTGGCTGCTGCAGCACCTGCCGCCATGAACAATCTGCAGTTGAAGAAACCCGACTCACCACAAAACCTGAAAAATTCTACTCAATGGTCAGTGGACACGGAAGGAGAACTAACTGGGGAGGCCATGGACCTTGGGGGTGAGAAAGCAATGGAGTCAGCACGAACACTATTGAGCATAGGGTTTGAAATTAAGCCTTGCTGA 516 0.4787 MKKSDLTNLDSPVKPGKKPKLVVHAAGDVGISGDGYRWRKYGQKMVKGNQHPRNYYRCTSAGCPVRKHIENAVDNSNAVTITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPAAMNNLQLKKPDSPQNLKNSTQWSVDTEGELTGEAMDLGGEKAMESARTLLSIGFEIKPC. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00939 171 Pfam WRKY DNA -binding domain 34 89 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00939 171 Gene3D WRKY domain 17 93 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00939 171 ProSiteProfiles WRKY domain profile. 27 92 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00939 171 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 131 IPR044810 GO:0003700
Seca12g00939 171 SUPERFAMILY WRKY DNA-binding domain 27 92 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00939 171 FunFam WRKY transcription factor 18 93 - -
Seca12g00939 171 SMART WRKY_cls 32 91 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00939 Seca-Chr12 8933278 8935544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00939 1 171 WRKY Transcription Factor Family AT4G30935 70.930 8.56e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g00939 WRKY 5.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00939 - - gmx:100782194 302.753