Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00931 ATGTTTGACAGTGGTCACAAATCAGAATACATGGGTGGCCAGCGGGAAAATTTTTTGAGGTTGGGTGTCATGGATTCTAGACTACCTTCGTCTTCAGATGCTGGAGTTAAAAAATCTGGATTTGGTATTGATAAGTTAAGCCATGGTGGTCCTGAAAGCAGCACAACCTCTAGGTCTTTTAAAAGAGGAATGATAAAGGGTTCTGAAGGACTGAAGTCAATTGGTAGATCACTTGGATTGGGGGTATCTAGGGCAGTGTTCCCAGAAGATCTTAAAGTGTCAGAAAAAAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTGTGGAATAAGCTTTTTGTTATCTCATGCATTTTGGCTGTGTCTGTGGATCCATTGTTTTTTTATCTCCCTGTCATCAATGATCAATTACACTGTCTCAGCATAGACCGAAAGTTGGCAACTATAGTTACCACCGTAAGGACAGTCGTTGATGCTTTCTATCTTATACACATGGCTCTCCAATTTCGTACAGCTTATATTGCTCCATCATCTCGTGTCTTTGGGCGGGGTGAGCTTGTGATAGATTCAGCACAGATAGCCAAGCGATACTTGCGGCGATATTTCATCATTGATTTCCTATCTGTGTTGCCGATACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAGAGTTCAGATGTACTAACAACTAAGCAGGCCTTGCTGTTCATTATCTTGCTTCAGTATGTTCCTAGATTTCTCCGAATGGTACCATTGACTTCAGAGCTCAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATATTATTTGCTGTTATACATGCTTGCTAGTCATATAGTTGGTGCGTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGGAGGCTTGCAGTGAGAATGGGTGCAATAAAAACTTCCTGTATTGTGGCAACCACTATACAGAGGGTTATAGTGCCTGGCAGAATAGAAGTAAAGATATTCTTAAGTCAAAGTGCTCTGCAGATGATGATCCTCCACCTTTTGATTATGGTATTTTTTCACAAGCTTTGACATCTGGTATTGTTTCATCTAAAAAGTTCTTCTCCAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACTAGCACATACCCTGGGGAGGTCATCTTTTCAATAGCACTAGCTATATTTGGCCTCATCCTATTTGCACTTCTAATTGGAAATATGCAGACATATCTTCAATCTCTTACCATTAGGCTCGAGGAGATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAACTTAGAGGGCGTGTGAGACGGTATGATCAATACAAGTGGTTAGCAACGCGTGGTGTAGATGAAGAAAGTTTAGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAGCGTCATCTCTGTTTGGCATTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGACTGCTTGATGCCATATGCGAGAGACTGAAACCGTGTTTATTTACAGAGATTACTTACCTTGTCCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGTGGTCGCCTTGAGAGTGTTACGACAGATGGAGGGAGGAGTGGATTTTTCAACCGTAGTTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTGGACCCCAGATCTGGTTCTAATCTCCCATCTTCTACTCGAACAGTTAAGGCATTAACAGAGGTTGAGGCTTTTGCCTTAACAGCTGACGAGTTAAAATTTGTCGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAAGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGATATTGTAAAAAGAAGATTATGAAGCTTCGTCAAAAGGAAGAAGCTGATGAGTCAGAAGGAACTCAAGACAATGCTGGTGGCAGTTCCTACAGCCTTGGGGCTGCCTTGTTAGCCTCTAAGTTTGCTGCACACACTCTCCGTGGTGTACATCGTAACCGACTTGCTAAGACTGCCAGGGAGTTAGTGAAACTACAGAAACCCCCTGAGCCTGACTTTACTGCAGATGATGTAACTACTCTCTTGAAATACTTGTTTTCATTGACATTATCATTGAACTTGTGA 2244 0.4287 MFDSGHKSEYMGGQRENFLRLGVMDSRLPSSSDAGVKKSGFGIDKLSHGGPESSTTSRSFKRGMIKGSEGLKSIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVINDQLHCLSIDRKLATIVTTVRTVVDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLRRYFIIDFLSVLPIPQIVVWRFLQRSKSSDVLTTKQALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQEACSENGCNKNFLYCGNHYTEGYSAWQNRSKDILKSKCSADDDPPPFDYGIFSQALTSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRGRVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEITYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPRSGSNLPSSTRTVKALTEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKKKIMKLRQKEEADESEGTQDNAGGSSYSLGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFTADDVTTLLKYLFSLTLSLNL. 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00931 747 ProSiteProfiles cAMP/cGMP binding motif profile. 505 589 IPR000595 -
Seca12g00931 747 SUPERFAMILY Voltage-gated potassium channels 100 427 - -
Seca12g00931 747 Pfam Ion transport protein 108 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca12g00931 747 SMART cnmp_10 505 636 IPR000595 -
Seca12g00931 747 Pfam Cyclic nucleotide-binding domain 530 616 IPR000595 -
Seca12g00931 747 Gene3D Jelly Rolls 503 623 IPR014710 -
Seca12g00931 747 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 90 726 - -
Seca12g00931 747 FunFam Cyclic nucleotide-gated ion channel 1 432 496 - -
Seca12g00931 747 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Seca12g00931 747 Gene3D - 111 430 - -
Seca12g00931 747 CDD CAP_ED 505 636 IPR000595 -
Seca12g00931 747 Gene3D Helix hairpin bin 433 496 - -
Seca12g00931 747 FunFam Cyclic nucleotide-gated ion channel 1 503 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00931 Seca-Chr12 8895554 8901496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00931 1 730 Ion Channels AT2G23980 75.600 0.0 1147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00931 K05391 - gmx:100784309 1284.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00931 12 8895554 8901496 Seca12g00931 12 8895554 8901496 ECH