Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00928 ATGGCTGCTTCTACAATATTGTTGTTCATGCTCTCAATGTGGCTGCTACTTTCCTGCACTGAAGCCACAGAATATGTGGTCGGAGACAGTGAAAATTCGTGGAAGTTTCCTCTTCCATCACCAGATTCACTCAGCCAGTGGGCCCAGATTCACCAATTCAGAATTGGCGATACAATCATTTTTAAATATGATAACAAAACAGAATCGGTGCACCTAGTGAATGAGGAAGAAGACTATTCAAGGTGCAAAACAAAGGGACAACACGTGGTGTTCAATGATGGAAATACCAAGGTGGTGCTTACCAAATCAGGACCAAAATTCTTTATCAGTGGAAAAGAGAGTCATTGCAAGATGGGATTAAAGGTGGCTGTGCTTGTTATGTCCAAGTCTATCAAAGGCAGAGAAAGGTCTCCTCCCCCGGTTCTCTCACCTTCACCAATTCCACCTATTAATCAAGGTGTTGATCGCAGCAGTAGATTCATGCTGAGGTTGTGGTTGTTATGTCTAATAATTATTTTTTTTGGTCTTTCATGTGCTCGTCGCCCTTTCGTTTTCGTGAGTAGTTGTTGTTACTAA 576 0.4201 MAASTILLFMLSMWLLLSCTEATEYVVGDSENSWKFPLPSPDSLSQWAQIHQFRIGDTIIFKYDNKTESVHLVNEEEDYSRCKTKGQHVVFNDGNTKVVLTKSGPKFFISGKESHCKMGLKVAVLVMSKSIKGRERSPPPVLSPSPIPPINQGVDRSSRFMLRLWLLCLIIIFFGLSCARRPFVFVSSCCY. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00928 191 ProSiteProfiles Phytocyanin domain profile. 23 128 IPR003245 GO:0009055
Seca12g00928 191 SUPERFAMILY Cupredoxins 21 128 IPR008972 -
Seca12g00928 191 Gene3D - 21 132 IPR008972 -
Seca12g00928 191 FunFam Cupredoxin superfamily protein 22 132 - -
Seca12g00928 191 Pfam Plastocyanin-like domain 34 119 IPR003245 GO:0009055
Seca12g00928 191 PANTHER BLUE COPPER PROTEIN 23 128 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00928 Seca-Chr12 8887686 8888827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00928 1 174 Phytocyanin Superfamily AT4G31840 32.768 1.62e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00928 - - gmx:100784860 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00928 12 8887686 8888827 Seca12g00928 12 8887686 8888827 ECH