Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00924 ATGGAGTTCAAATATCGTGCTAACGATAACAGACCAACAACACCAATGACCACTTCGCCTCCTATCTCAACAGTTACCTACATCACCGAACCAACGTTGCGAGGGGCAGGTGGTTTTGCGAGCATGTTCCCTTCGCCGAACGTTTTCCGAATGCCGGTGGGGAGCGGTGCCAGCGAAGCATTACGGAGAGAGCTGGAGAAGGAGCAAATCCGGCGGGAGATAATCGCCGGCGAGATTTTGCGGCGGCGAGAGCTTGAGGAGGAAGTGAGGAGGGAGTTGGCGTTGGAGAGAGAATTGGGGTTACAAATGCAGAGGAGTTTGATAACACCAACACCACAGGGATTCTCCTTTCAGGAGGAGCGAATGCCAATGTGCAGAGTGAACTCAATTGATGAAATAATTGCTGTGCCACAACCGCAGCAACTGCCACAGATTATGGCCCCTCCTGAAATCAAACCTTCTCCCAAAGATCAAGTTATCATACTTGCTAAGCCAGACCCTGATCAATATGATTCAAAGAAGAAAGAAGCGACGCCCACTGTTTATGGCAACATGCAGTCTCCACTTGCTTTGAAGAAAAAACCCAAGGAGGAGTGGAGTTGTGCACTATGTCAGATTAGTGCCACAAATGAGAAAGGCTTGAATGAGCATTTTCTTGGTAGGAAGCACAAGGCCAAGGAAGCTGCATTGAGCACTCAGAAGATTGGGTTGGATGCAAAAGCAGATGGCCAGTCACTTGAAGGGGCAAAGGAATCGAAAAATGAGGAACTGAAAAGCAGGGATTTGGAGAACAAAAATGAGGCAGCAACTGAGGAAGCAGGGAAAACAAATACATTGAAGAGGAAGAAGGTTGACTTTTGGTGTGAAGTTTGTCAAATTGGTACTTGGTCACAGATTGTGATGGAAAGCCATAAGAGAGGGAAGAAACACCTGAGGCGAATGATGACATTGGATGGAAACAATGTCAATGGGAGTGCCCCCCTCACATCCACTGCATCAAAGGCTCCTGTGCTGGTCAAAGATACAGATGATGCTGTGAAAAGTGCAACAACACCTGTTGTGACTGAAGAAACAGACCTAAAGGTGGCAGAGAATATTGCAGATTCAGATGAAGTTCATCCAGTGGCTGAATCAGGAGGAGATGGAATGGTTGAAGAAGGACTATGA 1167 0.4722 MEFKYRANDNRPTTPMTTSPPISTVTYITEPTLRGAGGFASMFPSPNVFRMPVGSGASEALRRELEKEQIRREIIAGEILRRRELEEEVRRELALERELGLQMQRSLITPTPQGFSFQEERMPMCRVNSIDEIIAVPQPQQLPQIMAPPEIKPSPKDQVIILAKPDPDQYDSKKKEATPTVYGNMQSPLALKKKPKEEWSCALCQISATNEKGLNEHFLGRKHKAKEAALSTQKIGLDAKADGQSLEGAKESKNEELKSRDLENKNEAATEEAGKTNTLKRKKVDFWCEVCQIGTWSQIVMESHKRGKKHLRRMMTLDGNNVNGSAPLTSTASKAPVLVKDTDDAVKSATTPVVTEETDLKVAENIADSDEVHPVAESGGDGMVEEGL. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00924 388 Coils Coil 252 272 - -
Seca12g00924 388 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g00924 388 SUPERFAMILY beta-beta-alpha zinc fingers 177 231 IPR036236 -
Seca12g00924 388 SMART ZnF_U1_5 196 230 IPR003604 GO:0003676|GO:0008270
Seca12g00924 388 SMART ZnF_U1_5 283 317 IPR003604 GO:0003676|GO:0008270
Seca12g00924 388 MobiDBLite consensus disorder prediction 244 274 - -
Seca12g00924 388 Gene3D Classic Zinc Finger 190 236 - -
Seca12g00924 388 Pfam Zinc-finger of C2H2 type 199 223 - -
Seca12g00924 388 Pfam Zinc-finger of C2H2 type 286 310 - -
Seca12g00924 388 Gene3D Classic Zinc Finger 261 316 - -
Seca12g00924 388 MobiDBLite consensus disorder prediction 241 274 - -
Seca12g00924 388 MobiDBLite consensus disorder prediction 368 388 - -
Seca12g00924 388 SUPERFAMILY beta-beta-alpha zinc fingers 276 314 IPR036236 -
Seca12g00924 388 PANTHER OS06G0651300 PROTEIN-RELATED 1 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00924 Seca-Chr12 8867809 8870868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00924 201 310 C2H2 Transcription Factor Family AT5G61190 30.909 5.10e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00924 - - aprc:113874763 303.523