Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00919 ATGCATCAAGGTGATCAAACGGTTCTGAGCTTGAGGCCTGGTGGTGGTCGAGGAAGCAGACTCCACGCTCCTAGATTCGATTCCTCTTCATCTGCCTCTTCTGCTTCCCCTGCTTTCGGTGATCTTCCTCTCTTGCGTTCCCATGGCGCCGCTCCTTCTCCTTTCTCTATCAAGGCTGGAGATTCGCGTTTTGAAGGTCGTGAGCGTGTGCGCTATACCAGAGATCAGCTTTTACAGCTTAGAGAGGCTGTTGAGGCCCTTGATGATATTTTAAAGATCAAACAAGATATTGAAGCTGAACTTCTTGGTGAAGATCAAAGTTGGGGCCGCTCAGAAAACAATTCCCCACCTCAATTTCAAAATCGATATTCCGAGCCAGATAACCGGGACTGGCGTGGTCGATCTGGGCAACTTCCTGCTAATGCAGATGAGAGGTCTTGGGATAATCTCAAGGAGAATAGAGAATTTGGCAATACTGGTCAGGGCAATCGTCAAGACCAACTGAATTCTCAGTTTGCAAGAGCACAAATCTCTTCTAACCAAGGGGGAGGACCTACTCCGACGCTAGTCAAGGCTGAGGTACCATGGTCAGCTAAAAGGGGAAGTCTCTCTGAAAAGGACCGTGTCTTGAAGACTGTTAAAGGAATACTAAATAAGTTGACTCCTGAGAAATTTGATATCCTGAAGGGTCAGTTGATCGATGCTGGCATTACATCCGCTGACATACTGAAGGGAGTTATTTCACTGATATTTGATAAGGCAGTGTTAGAACCAACATTTTGCCCCATGTATGCTCAGCTGTGTTTTGATCTTAGTGAAAAGCTGCCCCCTTTCCCATCTGAAGAGCCTGATGGGAAAGAAATAACTTTTAAGCGAGTACTCTTGAATAACTGCCAGGAGGCTTTTGAAGGTGCAGATAAACTGAGGGAAGAAATAAGGCAGATGACTGCTCCTGAGCAGGAGATGGAGCGACGTGACAAGGACAGACTTGTCAAGCTTCGTACCCTTGGAAACATCCGTTTAATTGGTGAGCTGTTGAAGCAAAAAATGGTTCCTGAAAAGATTGTCCATCACATTGTCCAGGAGCTTTTAGGGCCTCCTGACAGCAAGGTATGTCCAGCTGAGGAAAATGTTGAAGCTATATGTCAATTTTTCAACACTATTGGTAAGCAGCTCGATGAAAGCCCAAAATCACGGCGTATAAATGATATGTACTTTAGCCGGTTGAAAGAATTGAGCACAAATCCCCAACTTGCACCACGGCTGAGGTTCATGGTTCGTGATGTTTTAGATTTGCGTGCTAATAACTGGGTTCCAAGACGTGAAGAGGTAAAAGCCAAAACCATCACTGAAATTCATTCAGAGGCAGAAAAGAATCTTGGATTGCGTCCAGGTGCCACTGCAAGTATCAGAAATACCCGTGTAGTTTCTGGTGCTCAAGGAAATACGGGCCCCGGGGGCTTCCCCATTGCCCGACCTGGTACAGGAGGTTTAATGCCTGGGATGCCAGGGACCAGGAAGATGCCTGGGATGCCTGGAATTGATAATGACAACTGGGAGATGCCTAGGACTAGATCGATGCCAAGAGGAGACATGTCAGGCACACAAACCGGAGGACGTGGTCAGCCTCCTTTCCTTTCCAAGTCATCAGCGCTGAACTCGAAGTTACTACCTCAAGGTAGTGGTGGTCTTATAAGTGGGAAAAGTAGCGCCCTAGTGCATGGAGGTGGTGCTCCTCCTGCTCGTCCATCAAACTTTGGTTTAGGTACTGAGCCTGCACCTCAAAACCCTTCACCTGTTAAACCTGTTCCTACTGTATCCTCTGAGAAGCCACAGGCTCCAGCTACAAAATTGAATACTGCTGATCTTCAGCGCAAAACTATTTCTCTCTTGGAAGAATATTTCAATGTTCGGCTGTTGGATGAGGCATTACAGTGTGTGGAGGAACTAAAATCTCCAGCTTATCACCCTGAGGTTGTCAAGGAAGCCATTTCCCTTGCGCTAGATAAAAGTCCACCATGTGTTGAACCGGTTGCCAATCTTCTTGAGTATCTGTTTATTAAAAAGATCCTCTCAGCTAGAGACATAGGGACTGGATGTTTGTTGTTTGGTTCTCTGCTGGATGATATTGGCATAGATTTGCCTAAATCACCAAATAATTTTGGTGAGATAGTAGGGAAACTAATTTTGGCTGGGGGTTTGGATTTTAAGGTGGTGAGAGAGATCCTTAAGAAGGTTGAGGATGACCGGTTCCAGAAAACAGTATTTGACTCAGCAGTGCAGGTAATTACATCTGCATCCGGCCAAGCTGTGTTGGATTCACAAGCATCTGATATTGAGGCCTGCCGGAGTGTGCTCAAGTGA 2364 0.4619 MHQGDQTVLSLRPGGGRGSRLHAPRFDSSSSASSASPAFGDLPLLRSHGAAPSPFSIKAGDSRFEGRERVRYTRDQLLQLREAVEALDDILKIKQDIEAELLGEDQSWGRSENNSPPQFQNRYSEPDNRDWRGRSGQLPANADERSWDNLKENREFGNTGQGNRQDQLNSQFARAQISSNQGGGPTPTLVKAEVPWSAKRGSLSEKDRVLKTVKGILNKLTPEKFDILKGQLIDAGITSADILKGVISLIFDKAVLEPTFCPMYAQLCFDLSEKLPPFPSEEPDGKEITFKRVLLNNCQEAFEGADKLREEIRQMTAPEQEMERRDKDRLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKVCPAEENVEAICQFFNTIGKQLDESPKSRRINDMYFSRLKELSTNPQLAPRLRFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGATASIRNTRVVSGAQGNTGPGGFPIARPGTGGLMPGMPGTRKMPGMPGIDNDNWEMPRTRSMPRGDMSGTQTGGRGQPPFLSKSSALNSKLLPQGSGGLISGKSSALVHGGGAPPARPSNFGLGTEPAPQNPSPVKPVPTVSSEKPQAPATKLNTADLQRKTISLLEEYFNVRLLDEALQCVEELKSPAYHPEVVKEAISLALDKSPPCVEPVANLLEYLFIKKILSARDIGTGCLLFGSLLDDIGIDLPKSPNNFGEIVGKLILAGGLDFKVVREILKKVEDDRFQKTVFDSAVQVITSASGQAVLDSQASDIEACRSVLK. 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00919 787 MobiDBLite consensus disorder prediction 1 37 - -
Seca12g00919 787 ProSiteProfiles MI domain profile. 622 744 IPR003891 -
Seca12g00919 787 Pfam MA3 domain 623 735 IPR003891 -
Seca12g00919 787 SUPERFAMILY ARM repeat 203 439 IPR016024 -
Seca12g00919 787 Gene3D - 201 437 - -
Seca12g00919 787 Coils Coil 80 100 - -
Seca12g00919 787 MobiDBLite consensus disorder prediction 529 566 - -
Seca12g00919 787 MobiDBLite consensus disorder prediction 107 124 - -
Seca12g00919 787 SUPERFAMILY ARM repeat 618 767 IPR016024 -
Seca12g00919 787 SMART if4_15 210 436 IPR003890 GO:0003723|GO:0005515
Seca12g00919 787 Pfam MIF4G domain 210 436 IPR003890 GO:0003723|GO:0005515
Seca12g00919 787 Gene3D - 616 781 - -
Seca12g00919 787 MobiDBLite consensus disorder prediction 506 616 - -
Seca12g00919 787 MobiDBLite consensus disorder prediction 105 147 - -
Seca12g00919 787 MobiDBLite consensus disorder prediction 602 616 - -
Seca12g00919 787 FunFam Eukaryotic translation initiation factor isoform 4G-2 201 437 - -
Seca12g00919 787 FunFam Eukaryotic translation initiation factor isoform 4G-2 616 777 - -
Seca12g00919 787 SMART ma3_7 623 735 IPR003891 -
Seca12g00919 787 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 51 771 IPR045208 GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00919 Seca-Chr12 8827990 8833970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00919 1 785 Eukaryotic Initiation Factors Gene Family AT5G57870 66.076 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00919 K03260 - gmx:100781275 1335.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00919 12 8827990 8833970 Seca12g00919 12 8827990 8833970 ECH