Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00916 ATGGAAGCCAGCGCTGGACTAGTCGCTGGTTCTCACCACCGCAATGAGCTAGTTGTCATTCAGGGCCATGAAGAGCACAAGCCTTTGAAAAACTTGGATGGTCAAGTGTGTGAGATATGTGGTGATGATGTGGGAGTCACGGTGGATGGAGACTTGTTTGTGGCATGCAATGAGTGTGGTTTTCCAGCATGCCGGCCATGTTATGAATATGAAAGGAGGGAAGGGAGACAAGTCTGTCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGTCCAAGGGTTGAGGGAGATGAAGATGAGGAGGACGTGGATGATATTGAACATGAATTTAACATTGAGGACAAAATGAACAAGCATGACCATTCTGCTGAGGCCATGCTACATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATGCACACTTTCCAGCTGTTATTGCTGGTGGTCGCTCTCGGCCAGTGAGTGGGGAGTTTCCAATAGGTCATGGTTATGGGGAGCAGATGTTACCTTCTTCTCTGCATAAACGAGTGCATCCATATCCGGCATCTGAACCTACAGGAGGTGCAGGATGGGATGAAAAGAAAGAGGATGGAAACAAAGATAGAACGGATGACTGGAAATTACAACAAGGCAATCTGGGGCCTGAACCTGAAGAAGATCCAGATGCAGCCATGTTAGATGAAGCAAGGCAACCACTGTCAAGGAAAGTACCAATAGCATCTAGCAAAGTCAATCCATACAGGATGGTTATAGTGGCTCGGCTTGTTATTCTTGCTTTCTTCCTACGATATAGAATTATGAACCCAGTACATGATGCAATGGGGCTATGGCTAACTTCTATAATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAATGGTTTCCCATTGATAGAGAGACCTACCTTGATCGTCTTTCAATCAGGTATGAGCGTGAAGGTGAACCCAATATGCTTGCACCTGTAGATGTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTCTGGTTACAGCAAACACTGTTCTTTCAATCTTGGCCGTGGATTACCCAGTTGATAAGATATCCTGCTACATTTCTGATGATGGAGCTTCATTGTGTACATTTGAAGCCTTGTCAGAAACAGCAGAGTTTGCTAGGAAGTGGGTACCATTCTGCAAGAAATTTTCTATAGAACCTCGAGCACCAGAGATGTACTTCAGCGAGAAAATTGACTATCTAAAGGACAAAGTGCAACCCACTTTTGTCAAGGAGCGTAGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTGGCAAAAGCACAGAAGGTTCCTCCAGGAGGTTGGATTATGCAGGATGGGACACCATGGCCAGGAAACAATACTAAGGATCATCCTGGTATGATTCAAGTGTTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAATGAGCTTCCTCGTCTTGTTTATGTCTCTCGAGAGAAAAGGCCTGGATTTCAACACCACAAGAAAGCTGGTGCAATGAATGCTTTGATTCGGGTCTCTGCTGTGCTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATATCAATAACAGCAAGGCTGTTCGAGAGGCCATGTGCTTTTTAATGGATCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATTGATAGAAATGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGCATATGTTGGCACAGGGTGTGTATTTAGGAGGCAAGCTTTGTATGGCTATAATCCTCCAAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGCCCATGTTTTGGAAGGCGCAAGAAGGTTAAGTATGGAAAGAATGATGCAAATGGAGAGGCTGCAGGCCTAAGAGGAATGGATGATGACAAAGAGTTGCTGATGTCCCAAATGAATTTTGAGAAGAAATTTGGGCAGTCACAGATTTTTGTGACTTCAACTTTGATGGAAGAGGGAGGTGTGCCTCCTTCCTCAAGTCCAGCAAGCCAGCTCAAAGAAGCCATTCATGTAATCAGTTGTGGATATGAAGATAAAACTGAATGGGGAATTGAGCTAGGTTGGATTTATGGGTCTATTACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGATCCATTTACTGTATGCCAAAGAGAGCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGACTCAACCAGGTGCTTCGTTGGGCCCTTGGTTCCATTGAGATCTTCTTCAGTCGCCATTGCCCTTTATGGTATGGCTACAAAGAAGGCAAGCTAAAGTGGCTTGAGCGATTTGCCTATTCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTGGTTGCATATTGTGTGCTTCCTGCAGTCTGCTTGCTCACTGATAAATTCATCATGCCACCGATAAGCACTTTTGCTGGTTTGTACTTTGTTGCCCTCTTCTCTTCAATCATTGCAACAGGCATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACACCTCTTTGCTGTCATACAAGGTCTTCTAAAGGTTCTGGCTGGAATTGACACCAACTTCACTGTTACATCAAAGGCAGCAGATGATGAGGAATTTGGAGAATTATATACCTTTAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCATGGGGACCTCTATTTGGAAAACTCTTCTTTTCCTTCTGGGTGATTGTCCATTTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTTGTGATATGGTCAGTGCTACTGGCTTCCATTTTCTCCTTGCTCTGGGTGAGAATTGACCCATTCGTGCTCAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTGA 3120 0.4417 MEASAGLVAGSHHRNELVVIQGHEEHKPLKNLDGQVCEICGDDVGVTVDGDLFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFNIEDKMNKHDHSAEAMLHGKMSYGRGPEDDENAHFPAVIAGGRSRPVSGEFPIGHGYGEQMLPSSLHKRVHPYPASEPTGGAGWDEKKEDGNKDRTDDWKLQQGNLGPEPEEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRIMNPVHDAMGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAVDYPVDKISCYISDDGASLCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDRNDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGRRKKVKYGKNDANGEAAGLRGMDDDKELLMSQMNFEKKFGQSQIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYSNTTVYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC. 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00916 1039 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Seca12g00916 1039 MobiDBLite consensus disorder prediction 193 211 - -
Seca12g00916 1039 FunFam Cellulose synthase 448 622 - -
Seca12g00916 1039 CDD mRING-HC-C4C4_CesA 35 85 - -
Seca12g00916 1039 FunFam Cellulose synthase 19 110 - -
Seca12g00916 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 344 804 IPR029044 -
Seca12g00916 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 477 622 IPR029044 -
Seca12g00916 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 234 1006 - -
Seca12g00916 1039 SUPERFAMILY RING/U-box 21 107 - -
Seca12g00916 1039 MobiDBLite consensus disorder prediction 180 226 - -
Seca12g00916 1039 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Seca12g00916 1039 Pfam Cellulose synthase 331 1033 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca12g00916 1039 Coils Coil 429 449 - -
Seca12g00916 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00916 Seca-Chr12 8787450 8793152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00916 1 1039 Cell Wall Biosynthesis AT5G17420 85.673 0.0 1839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00916 K10999 - gmx:100779834 2034.61