Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00911 ATGATGTGTTTGTTTACATTTACATTGTTTTTTTTCTTCTTTCTGAACAGTGTCCATTCTAAGGTTTATGGAGGGGAACATGTTGGCCTTGTGAATGACAAAAGTTCACTTCTTTCATTCATGTCATGCATTACTTCGGACCCTGAAAATGCTCTAGAGACTTGGAAGTCACCAAGTGTTCATGTTTGTGATTGGTCAGGTGTTAGGTGCAACAATGCAAGTGACAGGATCATAGAGCTTGATCTCAGTGGAAGGTCACTAGGAGGAACCATTTCCCCTGCTCTTGCTAACCTCTCTTCCTTGCAAATTCTTGATCTTTCTGGGAATTTTTTGGTGGGTCACATTCCAAAAGAGCTAGGCCATTTAGTTCAGCTTGGACAACTCAGTTTGTCAGGGAATTTTCTTGAAGGGAACATTCCCTCTGAGTTTGGTTCCCTTCACAACTTGTACTACCTTGACATGGGAAGCAATCAGCTTGAGGGAGGGATTCCCCCATCACTTTTCTGCAATGGGACTTCCTTGAGTTATATTGACCTTTCTAACAATTCCTTAAGGGGACAAATCCCCTTGAGCAATGAGTGTATCCTTAAAGAGCTTAGGTTCCTCTTACTTTGGTCTAACCATCTTGTAGGCCAAGTTCCTTTAGCTCTTTCAAACTCTACCAAGCTTAAATGGCTTGATTTGGAGTCAAATATGTTGCATGGAGAGCTTCCATCTGAGATTATATGTAATTGGCCACAATTACAATTCCTCTACTTATCATATAACAATTTTGTTAGCCATGATGGTAACACCAATCTTGAACCTTTCTTTGCTTCCTTGATGAATTTATCTAACTTGCAAGAACTTGAATTGGCGGGGAACAATCTTGGTGGGAAGCTACCTCATATTATTGGTGATCTTCCTACTAGCCTGCAACAACTTCACCTAGAAGAAAACCTCATATATGGCTCTATACCTCCACACGTTTCCAACCTTGTCAACCTTACTTTCTTGAAGTTGTCCAGTAACCAAATAAATGGAACAATCCCTCCCAGCCTCTGCCAGATGGGTAGGCTAGAGAGAATTTATTTGTCAAATAATTCACTATTTGGTGAGATTCCTTCAACCCTTGGTGATATCAAGCATCTGGGTCTTCTAGATTTGTCAAGAAACAAGCTTTCTGGTTCAATTCCAGATAGTTTTGCAAACCTCCCCCAGTTAAGAAGGCTTTTACTTTATAACAACCAGCTTTCTGGAACAATCCCACCAAGTCTAGGAAAATGTGTCAATTTGGAGATTTTAGACTTGTCTCACAACAAGATTACAGGGATGATTCCTACAGAAGTTTCAGCCTTGACTAGCTTGAAACTATACTTGAATTTATCAAGCAATGACTTACATGGGCCTTTACCATTAGAACTCAGCAAAATGGACATGGTGCTTGCTATTGATGTATCCATGAATAATCTCTCTGGCAGAATCCCACCACAGCTGGAAAATTGCATAGCATTGGAGTACCTCAACCTTTCTGGTAATTCCTTAGAAGGCCCTCTTCCTTATTCATTAGGCCAATTGCCCTATATTCGAGCACTTGATGTGTCTTCAAATCAATTGACAGGGGCAATACCAGAATCCTTGCAGTTGTCTTCCTCTCTCAAGACACTTAATTTCTCTTTCAACAAATTCTCAGGGAATGTCTCAAACAAGGGAGCATTTTCATCCCTGACCATAGACTCTTTCCTGGGAAACAATGGTCTCTGTGGCCCAGTTGAAGGCATGAAACACTGTCATAGGAAACACAGTTATCATTTGGTGTTTTTGTTAATTCCTGTGTTACTATTTGGCACACCTCTGCTGTGCATGTGTAGGTACTCCATGGTAATCAAGTCAAAAGTGAGAAAGAGATTTGAAGTTGTTAGCAGAGGTGACTTGGAGGATGAAGAAGAGGAAACAAAACAGCTCAAGTACCCAAGAATTTCATATAGACAACTTAGAGAAGCCACTGGAGGCTTCAGTGCTTCAAGCCTAATTGGTGCAGGCAGGTTTGGACAGGTCTACAAAGGAGTCATCCTAGATAATACAAGAGTAGCAGTTAAGGTATTAGATACAGAAACAGCTGGTGAGATTTCAAGGAGCTTTAGAAGGGAATGTCAAATCCTGAAAAAGATCAGGCACAGAAATTTAATAAGGATCATCACAATTTGCAGCAAGCCAGAATTTAAGGCTCTTGTTCTTCCACTAATGCCAAATGGTAGCCTTGAGAGGCACCTATATCCAAGCCATGAGTTAAGCCAGAGATTGGATGTGGTTCAATTAGTGAGAATCTGCAGTGATGTGGCTGAGGGAATGTCTTATCTGCACCATTACTCTCCAGTGAAAGTGGTGCACTGTGATCTTAAGCCAAGCAATATACTCCTTGATGATGATCTGACAGCTTTGGTTACTGATTTTGGAATTGCAAGGTTTCTTAAAGGTGATGAGAGTACATCCACCAACAGTAATTCAGCATCTTTCAGTTCAACACATGGCTTATTATGTGGCTCTATTGGCTATATAGCTCCCGAGTATGGAATGGGAAAACATGCTTCAACTGAGGGTGATGTTTACAGTTTTGGAGTAATTCTGTTAGAGATTGTGACAGGTAGACGCCCTACAGATGTCCTCATCCATGAAGGCTCTAGCTTGCATGAGTGGGTTAAGAGACAATACTTACAGCCACACAAGCTTGAAAACATTGTTGAACAAGCACTTCAAAGGTGCTCTCCTTCTGGCACGCCAAGCCATCATAACAAAATTTGGAAAGATATCATTTTGGAACTCATTGAGATGGGGATACTCTGCACACAGCAGAATCCTTCAACAAGACCAAGCATGCTGGATGTAGCCCAAGAAATGGGGAGGTTGAAGGACTACCTCACTAATTCTTTCAGCAGTGAAGATAATTTAGTTGAAAAATAA 2940 0.4095 MMCLFTFTLFFFFFLNSVHSKVYGGEHVGLVNDKSSLLSFMSCITSDPENALETWKSPSVHVCDWSGVRCNNASDRIIELDLSGRSLGGTISPALANLSSLQILDLSGNFLVGHIPKELGHLVQLGQLSLSGNFLEGNIPSEFGSLHNLYYLDMGSNQLEGGIPPSLFCNGTSLSYIDLSNNSLRGQIPLSNECILKELRFLLLWSNHLVGQVPLALSNSTKLKWLDLESNMLHGELPSEIICNWPQLQFLYLSYNNFVSHDGNTNLEPFFASLMNLSNLQELELAGNNLGGKLPHIIGDLPTSLQQLHLEENLIYGSIPPHVSNLVNLTFLKLSSNQINGTIPPSLCQMGRLERIYLSNNSLFGEIPSTLGDIKHLGLLDLSRNKLSGSIPDSFANLPQLRRLLLYNNQLSGTIPPSLGKCVNLEILDLSHNKITGMIPTEVSALTSLKLYLNLSSNDLHGPLPLELSKMDMVLAIDVSMNNLSGRIPPQLENCIALEYLNLSGNSLEGPLPYSLGQLPYIRALDVSSNQLTGAIPESLQLSSSLKTLNFSFNKFSGNVSNKGAFSSLTIDSFLGNNGLCGPVEGMKHCHRKHSYHLVFLLIPVLLFGTPLLCMCRYSMVIKSKVRKRFEVVSRGDLEDEEEETKQLKYPRISYRQLREATGGFSASSLIGAGRFGQVYKGVILDNTRVAVKVLDTETAGEISRSFRRECQILKKIRHRNLIRIITICSKPEFKALVLPLMPNGSLERHLYPSHELSQRLDVVQLVRICSDVAEGMSYLHHYSPVKVVHCDLKPSNILLDDDLTALVTDFGIARFLKGDESTSTNSNSASFSSTHGLLCGSIGYIAPEYGMGKHASTEGDVYSFGVILLEIVTGRRPTDVLIHEGSSLHEWVKRQYLQPHKLENIVEQALQRCSPSGTPSHHNKIWKDIILELIEMGILCTQQNPSTRPSMLDVAQEMGRLKDYLTNSFSSEDNLVEK. 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00911 979 Gene3D Transferase(Phosphotransferase) domain 1 742 977 - -
Seca12g00911 979 Pfam Leucine Rich repeat 422 437 IPR001611 GO:0005515
Seca12g00911 979 Gene3D Ribonuclease Inhibitor 193 593 IPR032675 -
Seca12g00911 979 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 353 959 - -
Seca12g00911 979 CDD STKc_IRAK 671 962 - -
Seca12g00911 979 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 195 - -
Seca12g00911 979 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 742 972 - -
Seca12g00911 979 SUPERFAMILY L domain-like 273 574 - -
Seca12g00911 979 SMART LRR_sd22_2 220 247 - -
Seca12g00911 979 SMART LRR_sd22_2 98 121 - -
Seca12g00911 979 SMART LRR_sd22_2 277 303 - -
Seca12g00911 979 SMART LRR_sd22_2 422 443 - -
Seca12g00911 979 SMART LRR_sd22_2 146 179 - -
Seca12g00911 979 Gene3D Phosphorylase Kinase; domain 1 636 740 - -
Seca12g00911 979 SUPERFAMILY RNI-like 79 374 - -
Seca12g00911 979 Pfam Leucine rich repeat 352 411 IPR001611 GO:0005515
Seca12g00911 979 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Seca12g00911 979 Gene3D Ribonuclease Inhibitor 31 192 IPR032675 -
Seca12g00911 979 ProSiteProfiles Protein kinase domain profile. 665 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00911 979 SUPERFAMILY Protein kinase-like (PK-like) 646 957 IPR011009 -
Seca12g00911 979 Pfam Protein kinase domain 667 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00911 979 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515
Seca12g00911 979 Pfam Leucine Rich Repeat 498 517 IPR001611 GO:0005515
Seca12g00911 979 SMART serkin_6 665 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00911 979 ProSiteProfiles Leucine-rich repeat profile. 424 445 IPR001611 GO:0005515
Seca12g00911 979 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Seca12g00911 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Seca12g00911 979 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 201 596 - -
Seca12g00911 979 SMART LRR_typ_2 423 446 IPR003591 -
Seca12g00911 979 SMART LRR_typ_2 326 350 IPR003591 -
Seca12g00911 979 SMART LRR_typ_2 398 422 IPR003591 -
Seca12g00911 979 SMART LRR_typ_2 146 170 IPR003591 -
Seca12g00911 979 SMART LRR_typ_2 277 301 IPR003591 -
Seca12g00911 979 SMART LRR_typ_2 374 397 IPR003591 -
Seca12g00911 979 SMART LRR_typ_2 98 122 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00911 Seca-Chr12 8743421 8746957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00911 33 964 Receptor kinase-like Gene Family AT3G47570 35.088 2.44e-162 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca12g00911 Pkinase 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00911 - - gmx:100792446 1564.28