Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00902 ATGGCGAAAATATCACAGAAAGACAATGCAAGCAATATTACTCTAAACGCAACTAACAAGGTGAAACGAACGAGGAAAAGTGTCCCTAGAGACTCCCCACCTAAACGCAGCTCAATATACAGAGGAGTCACTAGGCACCGGTGGACTGGCCGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCGCAGAACAAGAAAGGACGACAAGTCTACCTTGGTGCTTATGACAATGAGGAGGCGGCAGCACATGCTTATGATCTAGCAGCGTTGAAATACTGGGGTCAAGATACCATTCTTAATTTTAAGTTATCAGTCTACCAGAATGAACTGAAAGAAATGGAAGGTCAATCAAGGGAGGAGTATATTGGATCACTGAGGAGGAAAAGCAGTGGTTTTTCTCGGGGAGTTTCTAAATACAGAGGTGTTGCCAGTTGCTTTTCAATGATCAGACATCATCATAACGGAAGGTGGGAGGCTCGGATTGGGAAAGTTTTTGGCAATAAATATCTTTATCTTGGAACTTATGCTACGCAGGAAGAAGCTGCCACAGCCTATGACATGGCAGCTATTGAATATCGAGGACTCAATGCTGTCACCAATTTTGATCTAAGCCGTTATATTAAATGGCTTAAGCCCAACAATAACATCATTAATAATGATAATAACAAGACTAATATTAATCTTGTTGACGTTAACCCTGATTGCAATGCCAACTTCGTCCCAAACATTAATCAAGAACTGGAGATTAGCTACTTCCACAATTGGAAATTACTCAATAATACAAGAGATGATGCCACGTTGGTTCAGCCTCGGCCAGGTGGTGCCACGTCAGCCTTGGATCTTCTGCTTCAGTCATCCAAGTTTAAAGAATTGGTGGAAATGACATCTGTGACCAATTTGTCGTCACCGTTGGAATCACACTGCACATTTCCTGATGAAATTCAAACGTACTTTGAATATGAAGATTCAAATAGATATGAGCGAGGGGATGGTGTTAATGTCATGTTCAACGAGATCAACTCCATTGTGCCTATGTTCCATTGCAATGACTTCAGCTGA 1068 0.4167 MAKISQKDNASNITLNATNKVKRTRKSVPRDSPPKRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAAHAYDLAALKYWGQDTILNFKLSVYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVASCFSMIRHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNIINNDNNKTNINLVDVNPDCNANFVPNINQELEISYFHNWKLLNNTRDDATLVQPRPGGATSALDLLLQSSKFKELVEMTSVTNLSSPLESHCTFPDEIQTYFEYEDSNRYERGDGVNVMFNEINSIVPMFHCNDFS. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00902 355 ProSiteProfiles AP2/ERF domain profile. 141 205 IPR001471 GO:0003700|GO:0006355
Seca12g00902 355 MobiDBLite consensus disorder prediction 1 22 - -
Seca12g00902 355 CDD AP2 140 207 IPR001471 GO:0003700|GO:0006355
Seca12g00902 355 ProSiteProfiles AP2/ERF domain profile. 39 105 IPR001471 GO:0003700|GO:0006355
Seca12g00902 355 SMART rav1_2 141 211 IPR001471 GO:0003700|GO:0006355
Seca12g00902 355 SMART rav1_2 39 111 IPR001471 GO:0003700|GO:0006355
Seca12g00902 355 SUPERFAMILY DNA-binding domain 153 207 IPR016177 GO:0003677
Seca12g00902 355 FunFam AP2-like ethylene-responsive transcription factor 38 107 - -
Seca12g00902 355 MobiDBLite consensus disorder prediction 1 38 - -
Seca12g00902 355 SUPERFAMILY DNA-binding domain 38 107 IPR016177 GO:0003677
Seca12g00902 355 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Seca12g00902 355 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Seca12g00902 355 Pfam AP2 domain 39 97 IPR001471 GO:0003700|GO:0006355
Seca12g00902 355 Pfam AP2 domain 153 197 IPR001471 GO:0003700|GO:0006355
Seca12g00902 355 Gene3D AP2/ERF domain 39 107 IPR036955 GO:0003700|GO:0006355
Seca12g00902 355 Gene3D AP2/ERF domain 140 207 IPR036955 GO:0003700|GO:0006355
Seca12g00902 355 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00902 Seca-Chr12 8672442 8675356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00902 35 209 AP2-EREBP Transcription Factor Family AT5G57390 69.143 2.42e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca12g00902 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00902 K09285 - gmx:100793339 529.635