Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00900 ATGTCGTTGCGGCCGCACCACCTTCAACCATCGCAACTAGCACCTCTACCGCCACCGCCACCGCCACCTCAGCAGCAACAACTGCAATTGTTGCCACAACCGCAATCCGAGAATGACCCACTGAAGATGGTGACTAACAACGTCTCTAGCATGGAGACCGATAAGGACATGTCAGCTAGTGTCTCGAAGGGTAATGATGCAGTCACTGGTCACATAATATCAACCACAATCGGAGGGGAAAATGGTGAACCTGAACAGACCATCAGTTACATGGCTGAACGTGTTGTTGGCACTGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACTGGGGAGACAGTTGCTATAAAGAAGGTCTTGCAGGACAAGCGGTACAAAAATCGTGAATTGCAGTTAATGCGCGTGATGGATCATCCAAATGTAATTTCCCTGAAGCATTGCTTCTTCTCTACAACAAGCAAAGATGATCTTTTTTTGAACTTGGTCATGGAATATGTCCCTGAGACAATGTACCGAGTTATAAAGCACTACAATAGCATCAACCAAAGAATGCCCCTAATCTATGTGAAATTATATACATATCAAATCTTTAGAGCACTAGCATATATCCATACTGTACTTGGAGTTTGCCATAGGGATGTGAAGCCTCAAAACATTTTGGTTGATCCTCTCACTCACCAAGTTAAGCTTTGTGATTTTGGGAGCGCAAAAGTTTTGGTCAAGGGTGAATCAAACATTTCGTACATAAGTTCGCGATACTATAGGGCCCCAGAACTAATATTTGGAGCGACAGAATATACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCGGAACTTCTTTTAGGCCAGCCATTGTTCCGGGGAGAAAATCAGGTGGACCAACAAGTAGAGATTATTAAGGTTCTTGGTACTCCGACTCGAGAAGAGATTCGTTGCATGAACCCTAATTATACAGTTTTTCGATCCCCGCATGTAAAAGCTCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCTTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCAAGTCTTCGTTACCGTGCACTGGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAGCCCAATGCCCGGCTACCTAATGGTCGTCCGCTACCTCCCCTTTTCAACTTTAAACAAGAATTAGCTGGAGCACCGCCTGAAGTGGTCCACAAACTCATCCCAAACCATGTCAGGCAGCAAACTGGTATTGGATTCCCATATCCGGCCAGTACATAA 1293 0.447 MSLRPHHLQPSQLAPLPPPPPPPQQQQLQLLPQPQSENDPLKMVTNNVSSMETDKDMSASVSKGNDAVTGHIISTTIGGENGEPEQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQLMRVMDHPNVISLKHCFFSTTSKDDLFLNLVMEYVPETMYRVIKHYNSINQRMPLIYVKLYTYQIFRALAYIHTVLGVCHRDVKPQNILVDPLTHQVKLCDFGSAKVLVKGESNISYISSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFRGENQVDQQVEIIKVLGTPTREEIRCMNPNYTVFRSPHVKAHPWHKVFHKRMPLEAIDLASRLLQYSPSLRYRALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGAPPEVVHKLIPNHVRQQTGIGFPYPAST. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00900 430 Gene3D Phosphorylase Kinase; domain 1 75 169 - -
Seca12g00900 430 Gene3D Transferase(Phosphotransferase) domain 1 170 417 - -
Seca12g00900 430 Pfam Protein kinase domain 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00900 430 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 54 419 - -
Seca12g00900 430 MobiDBLite consensus disorder prediction 11 28 - -
Seca12g00900 430 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00900 430 SUPERFAMILY Protein kinase-like (PK-like) 89 399 IPR011009 -
Seca12g00900 430 FunFam Glycogen synthase kinase-3 beta 74 169 - -
Seca12g00900 430 ProSitePatterns Protein kinases ATP-binding region signature. 96 120 IPR017441 GO:0005524
Seca12g00900 430 SMART serkin_6 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00900 430 CDD STKc_GSK3 85 377 IPR039192 -
Seca12g00900 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Seca12g00900 430 MobiDBLite consensus disorder prediction 1 42 - -
Seca12g00900 430 FunFam Shaggy-related protein kinase kappa 170 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00900 Seca-Chr12 8635423 8640157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00900 94 396 MAP Kinase Gene Family AT3G59790 33.962 5.34e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca12g00900 Pkinase 3.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00900 K14502 - mnt:21393664 703.36