Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g00898 | ATGGTTATGGCTCTCTACCTGGTTCTTCTCCTCTCGCTCTTCTTCCTCTCCTGTGAGCATCTCTGTTCCGCTTCCGAGCCTCGCAACCCCGAAGTGGAGGCTTTGATGAGCATAAAGGAAGCTCTGAATGATCCACACAGTGTGTTAAGCAACTGGGATGAATACTCTGTCGACCCTTGCAGTTGGACCATGATTACTTGCTCTCCTGATTACCTTGTTATTGGCCTGGGAGCCCCTAGCCAATCTCTTTCTGGAACTTTATCTGCAGCAATTGGAAATCTAACAAATCTTAGACAAGTGCTACTGCAGAACAACAATATCTCAGGCAAAATACCACTGGAACTTGGAAACCTTCCCAAGCTTCAGACTTTAGATCTTTCCAATAACCGGTTCTCTGGGGTGATTCCAGCCTCTCTGAGTCAAGTGAATAGTCTCCAGTACTTGAGGCTAAACAACAATAGCTTGTCTGGATCCTTTCCCATTTCACTGGCCAAAATCCCACACCTTGTTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCATTGCCCAAATTTCCAGCCAGGTCATTCAATATTGTGGGGAACCCATTAATTTGTGGAAGCAGCTCTACTGAAGGTTGCTCTGGATCAGCCACTCTCATGCCCATTTCTTTCTCAGAGTCCTTAACCTGTATTAAATTTCTATTTATAGGAAAACACAAGTCCAAAAAACTAGCAGTTGCACTTGGGGTCAGCTTTAGTTGTGTTTCTCTCGTGGTCCTGTTTTTTGGGCTCTTTTGGTATAGAAGGAAACTACATCACGGAGCCATCTTGTATATCAATGATTTTAAGGAAGAGGAAGTTGTTAGTTTGGGAAATCTTAAAAATTTCACTTTCAGAGAGCTCCAACATGTAACAGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGAGGGTTTGGCAATGTTTATAGGGGGAAGCTTGGAGATGGCACCATGGTCGCCGTGAAAAGGTTGAAAGATGTTACTGGTAGTGCTGGTGAATCCCAGTTCCAAACAGAATTGGAGATGATCAGCTTGGCAGTTCACCGTAATTTACTTCGCTTAATTGGATATTGTGCCACTCCTAATGAAAAACTTCTGGTTTATCCTTATATGTCTAACGGCAGTGTGGCCTCCAGGCTTAAAGGCAAACCAGCTTTAGATTGGAATACAAGAAAGAGGATAGCAATTGGAGCTGCAAGAGGCCTCCTGTATCTTCATGAGCAATGCGATCCAAAGATAATACACAGAGATGTAAAGGCCGCTAATGTGCTTCTGGATGACTATTGTGAGGCTGTTGTTGGTGATTTTGGGCTTGCAAAGCTCCTAGATCATGCAGATTCTCATGTCACCACTGCTGTCCGTGGAACTGTTGGACACATTGCACCAGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACTGATGTATTTGGATTCGGCATTCTCTTGTTAGAGCTCATAACTGGAATGACAGCTCTTGAATTTGGGAAAACTGTGAATCAGAAAGGTGCTATGCTGGAGTGGGTTAGGAAAATACAGCAAGAAAAGAATGTTGAAGTATTGGTGGACAAAGAGCTGGGGAACAACTATGATAGAATAGAGGTGGGGGAGATGCTGCAAGTAGCTTTACTTTGTACTCAATATTTGACAGCCCACCGTCCCAAAATGTCTGAAGTGGTCCGAATGCTTGAAGGTGATGGGCTTGCTGAGAAGTGGGCATCATCACATAATTATGGTAGCCACGCCATGAACCCTAGTCACAGTAACTGTAGCAATTGTTCATCCCACCCTACATCTGCTTCAAAACATGATGACAATGTTCATGATCGTTCAAGCATGTTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGATTCCTATGCCATGGAACTCTCTGGTCCTAGATAA | 1941 | 0.4364 | MVMALYLVLLLSLFFLSCEHLCSASEPRNPEVEALMSIKEALNDPHSVLSNWDEYSVDPCSWTMITCSPDYLVIGLGAPSQSLSGTLSAAIGNLTNLRQVLLQNNNISGKIPLELGNLPKLQTLDLSNNRFSGVIPASLSQVNSLQYLRLNNNSLSGSFPISLAKIPHLVFLDLSFNNLSGPLPKFPARSFNIVGNPLICGSSSTEGCSGSATLMPISFSESLTCIKFLFIGKHKSKKLAVALGVSFSCVSLVVLFFGLFWYRRKLHHGAILYINDFKEEEVVSLGNLKNFTFRELQHVTDNFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVTGSAGESQFQTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLKGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKIQQEKNVEVLVDKELGNNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASSHNYGSHAMNPSHSNCSNCSSHPTSASKHDDNVHDRSSMFGMTMDDDDEQSLDSYAMELSGPR. | 647 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g00898 | 646 | SMART | serkin_6 | 303 | 558 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g00898 | 646 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 7 | 582 | - | - | |
Seca12g00898 | 646 | ProSitePatterns | Protein kinases ATP-binding region signature. | 309 | 331 | IPR017441 | GO:0005524 | |
Seca12g00898 | 646 | MobiDBLite | consensus disorder prediction | 610 | 626 | - | - | |
Seca12g00898 | 646 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 422 | 434 | IPR008271 | GO:0004672|GO:0006468 | |
Seca12g00898 | 646 | SUPERFAMILY | Protein kinase-like (PK-like) | 285 | 573 | IPR011009 | - | |
Seca12g00898 | 646 | Pfam | Protein kinase domain | 304 | 566 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g00898 | 646 | ProSiteProfiles | Protein kinase domain profile. | 303 | 558 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g00898 | 646 | FunFam | Somatic embryogenesis receptor kinase 1 | 273 | 379 | - | - | |
Seca12g00898 | 646 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 380 | 592 | - | - | |
Seca12g00898 | 646 | SUPERFAMILY | L domain-like | 29 | 201 | - | - | |
Seca12g00898 | 646 | Gene3D | Transferase(Phosphotransferase) domain 1 | 380 | 590 | - | - | |
Seca12g00898 | 646 | Gene3D | Ribonuclease Inhibitor | 28 | 210 | IPR032675 | - | |
Seca12g00898 | 646 | MobiDBLite | consensus disorder prediction | 592 | 646 | - | - | |
Seca12g00898 | 646 | Pfam | Leucine rich repeat | 119 | 179 | IPR001611 | GO:0005515 | |
Seca12g00898 | 646 | Gene3D | Phosphorylase Kinase; domain 1 | 273 | 379 | - | - | |
Seca12g00898 | 646 | Pfam | Leucine rich repeat N-terminal domain | 29 | 68 | IPR013210 | - | |
Seca12g00898 | 646 | MobiDBLite | consensus disorder prediction | 592 | 609 | - | - | |
Seca12g00898 | 646 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 28 | 210 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g00898 | Seca-Chr12 | 8584655 | 8589919 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g00898 | 1 | 646 | Receptor kinase-like Gene Family | AT5G16000 | 63.441 | 0.0 | 802 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-II | Seca12g00898 | Pkinase | 5.5e-41 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g00898 | - | - | gmx:100797186 | 1085.86 |