Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00898 ATGGTTATGGCTCTCTACCTGGTTCTTCTCCTCTCGCTCTTCTTCCTCTCCTGTGAGCATCTCTGTTCCGCTTCCGAGCCTCGCAACCCCGAAGTGGAGGCTTTGATGAGCATAAAGGAAGCTCTGAATGATCCACACAGTGTGTTAAGCAACTGGGATGAATACTCTGTCGACCCTTGCAGTTGGACCATGATTACTTGCTCTCCTGATTACCTTGTTATTGGCCTGGGAGCCCCTAGCCAATCTCTTTCTGGAACTTTATCTGCAGCAATTGGAAATCTAACAAATCTTAGACAAGTGCTACTGCAGAACAACAATATCTCAGGCAAAATACCACTGGAACTTGGAAACCTTCCCAAGCTTCAGACTTTAGATCTTTCCAATAACCGGTTCTCTGGGGTGATTCCAGCCTCTCTGAGTCAAGTGAATAGTCTCCAGTACTTGAGGCTAAACAACAATAGCTTGTCTGGATCCTTTCCCATTTCACTGGCCAAAATCCCACACCTTGTTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCATTGCCCAAATTTCCAGCCAGGTCATTCAATATTGTGGGGAACCCATTAATTTGTGGAAGCAGCTCTACTGAAGGTTGCTCTGGATCAGCCACTCTCATGCCCATTTCTTTCTCAGAGTCCTTAACCTGTATTAAATTTCTATTTATAGGAAAACACAAGTCCAAAAAACTAGCAGTTGCACTTGGGGTCAGCTTTAGTTGTGTTTCTCTCGTGGTCCTGTTTTTTGGGCTCTTTTGGTATAGAAGGAAACTACATCACGGAGCCATCTTGTATATCAATGATTTTAAGGAAGAGGAAGTTGTTAGTTTGGGAAATCTTAAAAATTTCACTTTCAGAGAGCTCCAACATGTAACAGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGAGGGTTTGGCAATGTTTATAGGGGGAAGCTTGGAGATGGCACCATGGTCGCCGTGAAAAGGTTGAAAGATGTTACTGGTAGTGCTGGTGAATCCCAGTTCCAAACAGAATTGGAGATGATCAGCTTGGCAGTTCACCGTAATTTACTTCGCTTAATTGGATATTGTGCCACTCCTAATGAAAAACTTCTGGTTTATCCTTATATGTCTAACGGCAGTGTGGCCTCCAGGCTTAAAGGCAAACCAGCTTTAGATTGGAATACAAGAAAGAGGATAGCAATTGGAGCTGCAAGAGGCCTCCTGTATCTTCATGAGCAATGCGATCCAAAGATAATACACAGAGATGTAAAGGCCGCTAATGTGCTTCTGGATGACTATTGTGAGGCTGTTGTTGGTGATTTTGGGCTTGCAAAGCTCCTAGATCATGCAGATTCTCATGTCACCACTGCTGTCCGTGGAACTGTTGGACACATTGCACCAGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACTGATGTATTTGGATTCGGCATTCTCTTGTTAGAGCTCATAACTGGAATGACAGCTCTTGAATTTGGGAAAACTGTGAATCAGAAAGGTGCTATGCTGGAGTGGGTTAGGAAAATACAGCAAGAAAAGAATGTTGAAGTATTGGTGGACAAAGAGCTGGGGAACAACTATGATAGAATAGAGGTGGGGGAGATGCTGCAAGTAGCTTTACTTTGTACTCAATATTTGACAGCCCACCGTCCCAAAATGTCTGAAGTGGTCCGAATGCTTGAAGGTGATGGGCTTGCTGAGAAGTGGGCATCATCACATAATTATGGTAGCCACGCCATGAACCCTAGTCACAGTAACTGTAGCAATTGTTCATCCCACCCTACATCTGCTTCAAAACATGATGACAATGTTCATGATCGTTCAAGCATGTTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGATTCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1941 0.4364 MVMALYLVLLLSLFFLSCEHLCSASEPRNPEVEALMSIKEALNDPHSVLSNWDEYSVDPCSWTMITCSPDYLVIGLGAPSQSLSGTLSAAIGNLTNLRQVLLQNNNISGKIPLELGNLPKLQTLDLSNNRFSGVIPASLSQVNSLQYLRLNNNSLSGSFPISLAKIPHLVFLDLSFNNLSGPLPKFPARSFNIVGNPLICGSSSTEGCSGSATLMPISFSESLTCIKFLFIGKHKSKKLAVALGVSFSCVSLVVLFFGLFWYRRKLHHGAILYINDFKEEEVVSLGNLKNFTFRELQHVTDNFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVTGSAGESQFQTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLKGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKIQQEKNVEVLVDKELGNNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASSHNYGSHAMNPSHSNCSNCSSHPTSASKHDDNVHDRSSMFGMTMDDDDEQSLDSYAMELSGPR. 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00898 646 SMART serkin_6 303 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00898 646 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 582 - -
Seca12g00898 646 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Seca12g00898 646 MobiDBLite consensus disorder prediction 610 626 - -
Seca12g00898 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Seca12g00898 646 SUPERFAMILY Protein kinase-like (PK-like) 285 573 IPR011009 -
Seca12g00898 646 Pfam Protein kinase domain 304 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00898 646 ProSiteProfiles Protein kinase domain profile. 303 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00898 646 FunFam Somatic embryogenesis receptor kinase 1 273 379 - -
Seca12g00898 646 FunFam Somatic embryogenesis receptor-like kinase 1 380 592 - -
Seca12g00898 646 SUPERFAMILY L domain-like 29 201 - -
Seca12g00898 646 Gene3D Transferase(Phosphotransferase) domain 1 380 590 - -
Seca12g00898 646 Gene3D Ribonuclease Inhibitor 28 210 IPR032675 -
Seca12g00898 646 MobiDBLite consensus disorder prediction 592 646 - -
Seca12g00898 646 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515
Seca12g00898 646 Gene3D Phosphorylase Kinase; domain 1 273 379 - -
Seca12g00898 646 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Seca12g00898 646 MobiDBLite consensus disorder prediction 592 609 - -
Seca12g00898 646 FunFam Putative LRR receptor-like serine/threonine-protein kinase 28 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00898 Seca-Chr12 8584655 8589919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00898 1 646 Receptor kinase-like Gene Family AT5G16000 63.441 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca12g00898 Pkinase 5.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00898 - - gmx:100797186 1085.86