Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00886 ATGGGTGGCTTAGATGGCCATCTTCCTGTAATGGGTATGATAGGTTTACAAATTCATTATGCAGTGCTTGCTATCTTCACAAGAACTGCTCTGTTAGAAGGATTGAGTCCCACTGTGTTTGTAGTATATAGGCAAGGCATAGCCACTTTGGCATTGGCGCCTATGCTTTTTTCCCCTAAGAGGAGACAATCTTTAAAGATCTCATTGAGATTAAAGAGCTTCTCTTTGATGTTTGTGACCTCTCTTATTGGGGTTACAGCCAATCAGAATGCATATTTCAAAGGTTTATATTATTCATCTTCTACAGCAGCTACTGCAATGAGTAATCTGATACCAGCTTTAACTTTTGTAATTGCAGCAATTTTGGGATTTGAGAAAATTGATGTAAGAAGCATAAGAAGCATGGCCAAGATATTAGGGACAGTTTGTTGTGTGAGTGGAGCATTAACTATGGCACTGCTCAAAGGACATAAGGTGTTACACATGGTCATGGAGTTCCTTCCTTCTATGCATCTCACTGCCAGTGGAGGTGAGAATTGGCTGCTGGGTTGTCTATTGCTCTTAGCAAGTAGTGTTTTTTGGTCATGTTGGATGATCATGCAGGTACCAATTTCTTCAAGCTGCTCAGACCATTTATTATCAACCTTTTGGATGTGTTTCTTTGCAACAATACAGTCAGCCATATTTGCACTGCTCTTTGAGCAGGATCTTCAAGCATGGATTTTACATTCACCTCTGGAATTTTCATGCTGTTTATATGCAGGAGTTGGAATTGCAGTTAGCTTCTTTGTTCAATCCTGGTGCATCTCATTAAGAGGTCCCCTATACTGTGCAATGTTCAACCCTCTAGCAACAGTCATCACAGCTTTCATAGCTGCTACATTTCTACAGGAAGAGCTATACATTGGAAGTTTGATAGGGGCTGTTGGAGTGATCACTGGTTTATATATTGTGCTGTGGGGTAAAGCCAAAGACTTTGATGGGATTAAACAAGAGGCAGCACAATCAAACATGCATGATAATGAGATAAGTAGTAGGATTGATTTGGAACAACCGCTTTTGTCAGAGAAGTCAGAACATGTACCAGACAGCAAGATGGAGCCATGA 1107 0.4056 MGGLDGHLPVMGMIGLQIHYAVLAIFTRTALLEGLSPTVFVVYRQGIATLALAPMLFSPKRRQSLKISLRLKSFSLMFVTSLIGVTANQNAYFKGLYYSSSTAATAMSNLIPALTFVIAAILGFEKIDVRSIRSMAKILGTVCCVSGALTMALLKGHKVLHMVMEFLPSMHLTASGGENWLLGCLLLLASSVFWSCWMIMQVPISSSCSDHLLSTFWMCFFATIQSAIFALLFEQDLQAWILHSPLEFSCCLYAGVGIAVSFFVQSWCISLRGPLYCAMFNPLATVITAFIAATFLQEELYIGSLIGAVGVITGLYIVLWGKAKDFDGIKQEAAQSNMHDNEISSRIDLEQPLLSEKSEHVPDSKMEP. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00886 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 217 323 - -
Seca12g00886 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 151 - -
Seca12g00886 368 PANTHER WAT1-RELATED PROTEIN 8 326 IPR030184 GO:0016020|GO:0022857
Seca12g00886 368 MobiDBLite consensus disorder prediction 352 368 - -
Seca12g00886 368 MobiDBLite consensus disorder prediction 336 368 - -
Seca12g00886 368 Pfam EamA-like transporter family 182 319 IPR000620 GO:0016020
Seca12g00886 368 Pfam EamA-like transporter family 10 143 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00886 Seca-Chr12 8443637 8445627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00886 1 356 Nodulin-like Gene Family AT4G30420 47.154 7.04e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00886 - - gmx:100817369 548.125