Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00880 ATGCGAAATATGAGTTCAGTGAAGCAAGAATTTCTCCGTAAATGGATAACAGGTCTGAGAAAATATAGCTCTCAGAAGAAGAGCATGAGTTTGATGGAGAGAAAGAAGGCCATAAAGCGTTCTGCAGATTTAGCCATGGCTTCCACCAGAGACAAAGCCACTCGCTGGAGCCGTGCTCTTATTGCCAATGCTGCAAACAGCAACGTCTTAGCCTCACTACCACCACAGCAACAGAGAGTAATTAGGAAAAGCTTCACCAATTCATCATCATCACCACTTCTTCACATCAAAAGGATTAGAAGCAGAAAGCGTACGGTCCATAGGGGAATTAAAGAAAGGGTGGTGGCGAGTGTGATAGCGAAAAGAACAACAAGGCTCAAGAGTCTGTTACCAGGGGGAGAATTCATGGATGACGTGTCTTTGGTTGAGGAAACCCTAGATTATATCCAATCACTCACAGCTCAAGTTGAAGTTATGAGATGTCTTGTCACTGCCTCAGAGCTCATCATAAATCCACCCTAA 522 0.4406 MRNMSSVKQEFLRKWITGLRKYSSQKKSMSLMERKKAIKRSADLAMASTRDKATRWSRALIANAANSNVLASLPPQQQRVIRKSFTNSSSSPLLHIKRIRSRKRTVHRGIKERVVASVIAKRTTRLKSLLPGGEFMDDVSLVEETLDYIQSLTAQVEVMRCLVTASELIINPP. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00880 173 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 165 IPR036638 GO:0046983
Seca12g00880 173 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 152 IPR011598 GO:0046983
Seca12g00880 173 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 4 164 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00880 Seca-Chr12 8363703 8364224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00880 1 167 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30410 38.889 2.44e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00880 - - lja:Lj0g3v0101119.1 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00880 12 8363703 8364224 Seca12g00880 12 8363703 8364224 ECH