Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00867 ATGGGCACCAGTAGTTTTACTCAAGTTAAAGGTGACACCTTTCTGCCTCCATCAGAACAGCCACCCTATTTTCTTTCTCAGCCAAACCCACCTTTCCCTCCCATTATTCGATCTGATAATCTCAGTTTGAACGATAAGGCCTTGAAGGTTAGTCCTAGCATACTCCTTATCATCATAATTCTGGCTATTGTTTTCTTCATTTCTGGTTTGCTTCACCTCCTCGTTAGATTCCTATGGAGACCTCAGAGTAGAGAGCCTGATGATTTGGACAATGTCACTGCTCTTCAAGGTCAATTGCAGCAACTCTTCCATCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGATACCCTCCCTGTCTTCTTTTACAAAGCCATCATAGGATTGAAGAACCCTTTTGATTGTGCTGTTTGTTTGTGTGAATTTGAGCCAGAGGACAAGCTAAGGTTGTTGCCTAAATGTAGCCATGCTTTTCACATGGAGTGTATTGACACATGGCTCTTGTCACACTCTACTTGTCCTCTTTGTAGAGCTAGCTTGCTCCCTGATTTCTCTGGAAACAACAACTGTTCCCCTATTGTTCTTGTTCTAGAATCTGGGAGTGACAGTTCAAGGGAGATTGTTCCAGAAAGAGAGCCTTCTGGTGCTGTTGTTGGAAGAACAAGTTCGGTTATCACAACAAATTCTCGTCTTGGTTGCCGTGGAGAAAGCGAATTTGGATCAACTCGTGTTGATTTAGCTTCAAGTGAGAATCCTGATCCAAACATAGCAGGGGATGGTGTGGAGAAAGTGGTTACTGTTAAGCTGGGAAAGTACAGGAACGTGGATGGTGGCTGTGAAGAAGGAAGTAGCACCAACAATGTAGATGCTAGAAGGTGCTTTTCTATGGGGTCATTTGCTTATGTTTTGGATGAAAGTTCCTCACTTCAGGTACCTATAAGAACCCCAAGGAAGCAGCAATCAAGTAAGAAGAGGTCTGTTTTGCCTTTGACCCCTGGACACAGGCCTGCTATGTCAGAATGTGACTGTGAATCCAGAAGAGATTTCAAATTTTCAGGTTTTGATACAACTAGAGGTGTTGAGGATCTTACTGGGACATCAAGTACTGGGAATGGTAGTGGGGCTGCTATTGGAAGGAGCAGAAAGGAGAGCTTTTCTATATCAAAGATTTGGCTAAGGGGGAAGAAGGATAGGTCAAATTCAGTGGCAGATTCATCCAGAAGGGCTGTTTCATTCAGGTTCCCAGCACAGCATAATGTTGTTGGTGATAGTGCTACAGATGATTTGAAGGGCAAGAATGGCAAATTTGATACAAGGAGCACTATTTCTGAGATGGATATTGGGAAATGGGAAAATGGAGGAGGAGGAAGTGAGTTTGGGTATGATGAGGAAAACCAGAGCTGTTATAGTATGGATTCTCAAGCTAGAGCACCTTCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAAGACAGAACAAGGTTGTTCACTCATCCTATGCTTCCAATCTCTAG 1515 0.4356 MGTSSFTQVKGDTFLPPSEQPPYFLSQPNPPFPPIIRSDNLSLNDKALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQSREPDDLDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFFYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFSGNNNCSPIVLVLESGSDSSREIVPEREPSGAVVGRTSSVITTNSRLGCRGESEFGSTRVDLASSENPDPNIAGDGVEKVVTVKLGKYRNVDGGCEEGSSTNNVDARRCFSMGSFAYVLDESSSLQVPIRTPRKQQSSKKRSVLPLTPGHRPAMSECDCESRRDFKFSGFDTTRGVEDLTGTSSTGNGSGAAIGRSRKESFSISKIWLRGKKDRSNSVADSSRRAVSFRFPAQHNVVGDSATDDLKGKNGKFDTRSTISEMDIGKWENGGGGSEFGYDEENQSCYSMDSQARAPSFARRTLLWLTGRQNKVVHSSYASNL. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00867 504 CDD RING-H2_EL5-like 134 177 - -
Seca12g00867 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 182 IPR013083 -
Seca12g00867 504 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g00867 504 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Seca12g00867 504 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 391 - -
Seca12g00867 504 FunFam RING-H2 finger protein ATL46 97 182 - -
Seca12g00867 504 MobiDBLite consensus disorder prediction 312 341 - -
Seca12g00867 504 MobiDBLite consensus disorder prediction 312 327 - -
Seca12g00867 504 SMART ring_2 135 176 IPR001841 -
Seca12g00867 504 Pfam Ring finger domain 134 177 IPR001841 -
Seca12g00867 504 SUPERFAMILY RING/U-box 114 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00867 Seca-Chr12 8275401 8276915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00867 40 502 C3H Transcription Factor Family AT2G18650 45.455 2.37e-102 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00867 - - gmx:100797283 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00867 12 8275401 8276915 Seca12g00867 12 8275401 8276915 ECH