Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00866 ATGCCTCCTCCTCATCAAGATCAACACCATGCCGATCCCCAACCAAAACCAAACCCTAATCTCCTTTCCTTCTTCCTCAAACCCATCATCATGCTCCTCCTCACCTCCCTCTTCTTCCTCTTCCTTGGCTTCGCCGCCTTCCTCCTCCTCCACCTCTTCCTCATAGGCGGTGCCCTCCACCGCCTTCGCTTCCGCCCCGCCGCCACCCCCTCCGGCGCCCTCCACCCTCGCGACCTCAACAAGCTCCCCCACTTCCGGATCTCCAAGGGATCCGCAATTGGATCCGATTCCCATTGCGTTGTCTGTTTGGACGGCTTCCGAAACGGCCAGTGGTGCAGAAAGCTCGCCGCTTGCGGCCACGTCTTTCACCGGAGATGCGTCGACACGTGGCTCGTCAAGGTTGCCGCATGCCCTACATGCCGCACACCTGTTCGATTGAATGCCGAAGCTCCGGATTCTGTCCCGTCAGAAGGTTATAGACAATTTTGGACGTGCCCAACTAATACCAATGCTTTCACGATTTCATAG 528 0.572 MPPPHQDQHHADPQPKPNPNLLSFFLKPIIMLLLTSLFFLFLGFAAFLLLHLFLIGGALHRLRFRPAATPSGALHPRDLNKLPHFRISKGSAIGSDSHCVVCLDGFRNGQWCRKLAACGHVFHRRCVDTWLVKVAACPTCRTPVRLNAEAPDSVPSEGYRQFWTCPTNTNAFTIS. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00866 175 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 149 - -
Seca12g00866 175 Pfam Ring finger domain 98 141 IPR001841 -
Seca12g00866 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 149 IPR013083 -
Seca12g00866 175 SMART ring_2 99 140 IPR001841 -
Seca12g00866 175 SUPERFAMILY RING/U-box 93 147 - -
Seca12g00866 175 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00866 Seca-Chr12 8252938 8254217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00866 16 165 C3H Transcription Factor Family AT2G18670 45.752 1.36e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00866 - - pvu:PHAVU_003G150700g 224.172