Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00855 ATGGCTAAGTGGTTCTGCAGGTGCCATTTTCTTATCATGATTTTGGTTGTGCTGCTAGAGATACAAAGTGGGAGTGGGTCAAATGCAACATCAATGGGAGTGATCAAGTTGAGAGTCGGGGTACCCAAGAAAGACGGTTTCTCCCAATTTATGAACATAGCTTGGGACTCCCGGGAAAACAAGTACAATATCACTGGATATTGCATGGAGGTTTTCTATGCCGTTATAAACCACTTACCTTTCAACGTTTCTCTACGAATTGAACCTTATGTTAATGAATCAGGACACAGTGCTGGAACATACGATTCACTTGTCCAACAGCTCCCAACCAAGCAGTATGATGTTGTGGTGGGGGATATAACAATCGTGGCCAACCGTTCACAATATGTAGATTTCACACTTCCATATTCAGAATCAGGAGTTAGAATGTTAGTACCAGTTCAACATGGGAGGCACCAAACCATGTGGATCTTTGTGAAACCCTTCAGCTGGGATCTATGGTTGTGCATAGTCATCATCTCAATGTTCATAGGGCTTGTCATACTCATCATGGAAAGAAATGCACATACCCTGCCTCATCACGACGACGTCGCTTCCCCAAATCGAAACCACCTCAGCGCCATAACCGTCTTATGGTTTCCAATATCACAAGCCGTTCTCCCCGAAAGGCAAGTAGTAGCCAAGAACTGTTCGAGATTTGTGTTGATGGTTTGGCTTCTGTTGTCGTTCGTACTCATGCAAAGTTACACCGCAAATTTGACGACTATATTGACATTAGATCAGATTCAACCCAAATTTGTGAGCGTGGAACATCTAAGAAAAGGGGGTTATTATGTTGGGTATCAAGCTGGATCTTTCGTTCAGGATCTGTTGGTACAGCAATTGAAATTTAACACATCCAAGCTGAAGGGATATAACAACATTTCTGAATATCACCATGCTTTGAGTATTGGAAGCGAAGTCGCAGCTATATTCGACGAAGTGCCCCATCTTAAGGTCTACCTTAAAAAAAATGGGCCCAATTACATCATGGCCGGCCCGACCTATCGAAATGATGGGTTCGGTTTCGCGTTCCCTTTAAACTCTAATCTTACGGCCCATTTTTCAAGAGCTATATTGAACGTGACTGAAAGTGATTTAATGAATGAGATTGAGGAAAAATATTTTGGGAAGTACTATGAATTAGAAGAGAAGTCAACGCAAACGTGTCCTCCAAGCCTCACGTTTTATAGCTTTGCGGGGCTGTTCATGATAACGGGGATTGCTACTTTGTTAGCGTTAGTGGTTTCAGAAACGGTTATTTGGCAAAGACCTATTTTGATGGCTAAAGCATACAGTCAAAAATATTTGTTCCGCACTTCATCTGTTCATCCAAGGTCTAATAATTCAACACATCGAGAGGGAGGAATAGAAATGGAAGACGTTTAA 1428 0.4209 MAKWFCRCHFLIMILVVLLEIQSGSGSNATSMGVIKLRVGVPKKDGFSQFMNIAWDSRENKYNITGYCMEVFYAVINHLPFNVSLRIEPYVNESGHSAGTYDSLVQQLPTKQYDVVVGDITIVANRSQYVDFTLPYSESGVRMLVPVQHGRHQTMWIFVKPFSWDLWLCIVIISMFIGLVILIMERNAHTLPHHDDVASPNRNHLSAITVLWFPISQAVLPERQVVAKNCSRFVLMVWLLLSFVLMQSYTANLTTILTLDQIQPKFVSVEHLRKGGYYVGYQAGSFVQDLLVQQLKFNTSKLKGYNNISEYHHALSIGSEVAAIFDEVPHLKVYLKKNGPNYIMAGPTYRNDGFGFAFPLNSNLTAHFSRAILNVTESDLMNEIEEKYFGKYYELEEKSTQTCPPSLTFYSFAGLFMITGIATLLALVVSETVIWQRPILMAKAYSQKYLFRTSSVHPRSNNSTHREGGIEMEDV. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00855 475 CDD GluR_Plant 36 389 - -
Seca12g00855 475 SUPERFAMILY Periplasmic binding protein-like II 36 391 - -
Seca12g00855 475 SMART GluR_14 36 391 IPR001320 GO:0015276|GO:0016020
Seca12g00855 475 FunFam Glutamate receptor 2.7 32 154 - -
Seca12g00855 475 Gene3D - 155 303 - -
Seca12g00855 475 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 437 IPR015683 -
Seca12g00855 475 Pfam Ligand-gated ion channel 392 422 IPR001320 GO:0015276|GO:0016020
Seca12g00855 475 Gene3D - 341 395 - -
Seca12g00855 475 Gene3D - 30 154 - -
Seca12g00855 475 Pfam Bacterial extracellular solute-binding proteins, family 3 62 391 IPR001638 -
Seca12g00855 475 MobiDBLite consensus disorder prediction 456 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00855 Seca-Chr12 8086726 8088768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00855 37 429 Ion Channels AT2G29120 41.221 4.57e-89 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00855 K05387 - gmx:100811144 612.838