Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00853 ATGGGATCCTCCTTTAGTTGCTGCGGCTCAGAGAAGGTCGAAGAAGTGCCAACATCATTTGGTGCAGTTAACAATTCATGGAGAATTTTCACATACAAGGAGTTGCATGCAGCTACCAATGGGTTCAGTGAAGATAATAAGCTTGGTGAAGGTGGTTTTGGAAGTGTTTATTGGGGAAGAACCAGTGATGGCCTCCAGATAGCGGTGAAGAAACTGAAAGCAATGAACTCAAAGGCAGAGATGGAATTTGCAGTAGAAGTTGAAGTTCTTGGAAGGGTTAGGCACAAAAATTTACTGGGTCTTAGAGGCTACTGTGTTGGCGATGATCAAAGGCTTATAGTCTATGATTACATGCCAAATCTCAGTCTGCCATCTCATCTACATGGTCAGTTTACTGCTGAAGTGCAACTCAACTGGCAAAGGAGAATGAAGATTGCAATTGGCTCTGCAGAAGGCCTTCTGTACCTGCACCATGAGGTGACACCCCATATCATCCATAGGGACATCAAGGCAAGTAATGTGCTTCTGAATTCAGATTTTGAGCCTCTAGTTGCTGATTTTGGGTTTGCAAAGCTAATCCCAGAAGGAGTTAGCCACATGACTACCCGTGTTAAGGGTACCTTAGGATACTTGGCACCAGAATATGCCATGTGGGGAAAGGTCTCTGAAAGTTGTGATGTCTATAGCTTTGGAATTCTTCTGTTAGAGCTTGTAACTGGTAGAAAGCCCATAGAGAAGCTCCCAGGTGGGGTTAAGAGAACAATAACTGAATGGGCTGAGCCTTTGATAACCAAAGGAAGGTTCAGGGATCTGGTTGATCCTAAGCTAAGAGGGAACTTTGATGAAAATCAAGTCAAACAAGCAATCAATGTGGCTGCTCTTTGTGTGCAAAGTGAGCCTGAGAAGCGACCTAACATGATGCAAGTGGTTAGCCTTCTGAAAGGATCTGAACCTGATGGGAAAGTGACCAAGATGAGGATTGATAGTATCAAATATAGTGAAGAACTAATGGCACTTGATCAACCTAGTGATGATGATTATGATGGAACCACTAGCTATGGTGTTTTTAGTGCCATTGAAGTCCAAAAGATGAATGACCCTTACAAACGTGCCCCTGCTAAAATACTAATTGGCCTCTCTTTAGACCCAAATGACAGCAAGGAGATTCTCTCATGGGCAATAAGAGTTCTAGCCAATCCTAATGACAACATTGTGGCCGTGCATGTTCTTGTTGCTGAGGATAAGAAGAAACGTGTCTCAGTCAGAAGAAGGCAATCACAACTTAGGCAGGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAAACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCCAAAGTGGCACTCAGTTCCACAATTGGTGAAGGTTTAGTCCATGAAGCTAAATCCATCTCAGCTGATTTTCTTCTTCTTCGTGGCTCAAGAAACCAAACAAATAATAGATTTGGAGCCTCTAAAGGAATTACCAAGTATTGCTTTGAGCATGCACATGAAGGCTGTTCAGTGGTCTCAGTTGGGAGATGTACAAAGGCAGAGCCAAATGCCAATTCAAATTCAACACATTCTCAAGATAATCGTCAACCAATTTCAAGAAGGTTTAAGAAGAAGGATAACCAAGGTGACAAGGCTACCTCCCCTGTTCTGGAGGATTTCATCATAGGAACAAGGGCACAGAACAGTTCACCAAGAACTGTACTTGATGCTCTGGAGGGACAATCAAACAGCACAGAAGATGACACCTTTAGCACTAGGGTCTCAAGCAGCACATATACTCCTTCATCAGGTCCTAAGATTAAGAGCCAATCCAAGTTAAGAAAATCACAGTTCTCATTCAGGTTCATAGTCTCATTCCTTGGTTCACCATTCAGAAGAAGAAACTTCAGCATATCCAAAAATGAAAAGCCTCAGCCCATGTTGAAGTGCTTCAGCTATGAAAAGATATCCAATGCTACTAATGACTTCCATCAAGATAATCTGGTTGGAAGAGGTGGGTACTCAGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCTGTGAAGAGGTTGGCTAAGGACAACAAGGATCCTAACAAGGAAAAGGAATTCCTTATGGAGTTGGGTGTTATTGGACATGTTTGCCATCTTAATACTGCAACTTTATTGGGCTACTGTGTTGAAAATGGGCTCTATCTCATTTTCAATTACTCTCAAAATGGAAACTTGGCAACTGCATTGCATGGTAAAACAGGAAATTCACTTGACTGGCCAATCAGATACAACATTGCTATTGGAGTTGCAAGGGGTCTCCATTATCTTCATAAATGTTGCAAACATAGAATAATTCATCGTGACATTAAAGCCTCTAATGTTCTTCTAGGTCCTGATTATGAACCACAGATTACTGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCATCATGCTGTAATCCCTGTGGAGGGCACATTCGGATACTTAGCACCAGAGTACTTTATGCATGGAATTGTGGATGAGAAAACAGATGTTTTTGCATTTGGAGTTCTTCTTCTGGAGATTGTAACTGGACGAAGACCTGTTGATTCATCAAAACAAAACCTTCTCCTATGGGCAAAGCCTTTGATGGAATCAGGAAATATTGGTGAGCTAGCTGATCCAAGAATGGAAGGTAAATATGATGAAGAGCAATTGTATAGGGTAGTGCTAACAGCTTCATATTGTGTGAGACAAACTGCCATGTGGCGTCCCCCAATGAGCGAGGTGTTAGAGCTGCTAACCAGTGGCCAAGACTGTGAGGTTGGAAAGAGCTGGAGGATCCCAAAGTTCACTTCTGATGAATTGGATGATTATTCTATGGTTTTCGGATATGATGTCCCTTCAGACATATCTCTGGAGGATTATTTGTGA 2925 0.4215 MGSSFSCCGSEKVEEVPTSFGAVNNSWRIFTYKELHAATNGFSEDNKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLPSHLHGQFTAEVQLNWQRRMKIAIGSAEGLLYLHHEVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGVKRTITEWAEPLITKGRFRDLVDPKLRGNFDENQVKQAINVAALCVQSEPEKRPNMMQVVSLLKGSEPDGKVTKMRIDSIKYSEELMALDQPSDDDYDGTTSYGVFSAIEVQKMNDPYKRAPAKILIGLSLDPNDSKEILSWAIRVLANPNDNIVAVHVLVAEDKKKRVSVRRRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEAKVALSSTIGEGLVHEAKSISADFLLLRGSRNQTNNRFGASKGITKYCFEHAHEGCSVVSVGRCTKAEPNANSNSTHSQDNRQPISRRFKKKDNQGDKATSPVLEDFIIGTRAQNSSPRTVLDALEGQSNSTEDDTFSTRVSSSTYTPSSGPKIKSQSKLRKSQFSFRFIVSFLGSPFRRRNFSISKNEKPQPMLKCFSYEKISNATNDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHLNTATLLGYCVENGLYLIFNYSQNGNLATALHGKTGNSLDWPIRYNIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIGELADPRMEGKYDEEQLYRVVLTASYCVRQTAMWRPPMSEVLELLTSGQDCEVGKSWRIPKFTSDELDDYSMVFGYDVPSDISLEDYL. 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00853 974 Gene3D Phosphorylase Kinase; domain 1 15 117 - -
Seca12g00853 974 Gene3D Phosphorylase Kinase; domain 1 631 740 - -
Seca12g00853 974 Pfam Protein kinase domain 664 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00853 974 Pfam Protein kinase domain 43 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00853 974 MobiDBLite consensus disorder prediction 572 611 - -
Seca12g00853 974 Gene3D HUPs 360 515 IPR014729 -
Seca12g00853 974 CDD STKc_IRAK 48 315 - -
Seca12g00853 974 MobiDBLite consensus disorder prediction 537 553 - -
Seca12g00853 974 Gene3D Transferase(Phosphotransferase) domain 1 118 330 - -
Seca12g00853 974 FunFam PTI1-like tyrosine-protein kinase At3g15890 14 117 - -
Seca12g00853 974 CDD USP_Like 374 515 - -
Seca12g00853 974 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524
Seca12g00853 974 MobiDBLite consensus disorder prediction 522 536 - -
Seca12g00853 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Seca12g00853 974 PANTHER OS08G0249100 PROTEIN 424 944 IPR046958 -
Seca12g00853 974 Gene3D Transferase(Phosphotransferase) domain 1 742 942 - -
Seca12g00853 974 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 741 945 - -
Seca12g00853 974 SUPERFAMILY Protein kinase-like (PK-like) 638 931 IPR011009 -
Seca12g00853 974 ProSiteProfiles Protein kinase domain profile. 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00853 974 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 373 507 - -
Seca12g00853 974 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Seca12g00853 974 SMART serkin_6 664 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00853 974 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00853 974 FunFam Putative receptor-like serine/threonine-protein kinase 631 740 - -
Seca12g00853 974 MobiDBLite consensus disorder prediction 522 559 - -
Seca12g00853 974 SUPERFAMILY Protein kinase-like (PK-like) 25 315 IPR011009 -
Seca12g00853 974 ProSiteProfiles Protein kinase domain profile. 664 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00853 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Seca12g00853 974 FunFam PTI1-like tyrosine-protein kinase At3g15890 118 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00853 Seca-Chr12 8016197 8025143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00853 652 970 Trihelix Transcription Factor Family AT1G70460 40.653 2.88e-72 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Seca12g00853 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00853 - - gmx:100782832 1045.03