Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00852 ATGGGAATTGAAAGAGGAGGACTCAAGGGTTTTAGGAGCGGCTGGAGTGTGCCGCCGAAGCCATGTGATTCTTGCAAGTTGGCTTCGGCGGCGCTCTTCTGCCGCCCTGATTCCGCGTTTCTCTGCATCGCATGTGATTCCAAGATTCACTGCGCCAACAAGCTCGCATCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAAGCACCTGCCTCTGTCACCTGCAAGGCCGACGCCGCCGCCCTCTGCGTCACGTGCGACTCAGACATCCACTCTGCTAACCCCCTCGCCCGCCGCCACGAGCGTGTCCCTGTCGAGCCTTTCTTTGAATCCGCTGAGTCCATCGTGAAATCCTCCGCCGCCTCCTTTAACTTCGTCGTCCCTAACGACGACGGATTCAACCAAGACGACGCCGAAGCAGCGGCGTGGCTCATTCCTAACCCGAATTTCGGATCCAAGCTCATGGACGCCCCTGATATCAAGTCCAGGGAGATGTTCTTCTCAGAAATGGATCCGTTTCTGGATTTCGATTACTCAAACTCCTTCCAAAACAACAACCACAACAGCGCAGTAAACGACAGCGTCGTTCCAGTTCAAACCAAACCCGCTCCTGCTCCTGCTCCTGCTCCCGCTCCCCTGATGAATCATCACTCCGAAGGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCCTCCTTTAACTACAATTCTCAGTCTCTTAGCCAAAGCGTTTCTTCTTCTTCGCTTGATGTTGGAGTGGTGCCAGAGGGGAACACGGTGTCGGAGATATCGTATCCTTTCGGTAGGAATAGTTCCGATTCGAGTGGGATGGTGTCAGGAGGTAGCAGCCAAGGGCAAGGGGTTACGCAGTTGTGTGGGATGGATCGTGAAGCGAGGGTTCTGAGATACAGAGAGAAGAGGAAGAACCGCAAGTTTGAGAAGACGATTCGTTACGCTTCGCGAAAGGCTTATGCGGAAACCCGGCCCAGAATCAAAGGCCGGTTCGCCAAACGAACCGAAATTGACTCGGATGTGGACCGTCTCTATAGCCCTGGTGCTGGTCTCACAGTCCCTGGGTCTCTTATCATGGACACTCCCTACGGCGTCGTACCAACGTTTTAG 1131 0.5447 MGIERGGLKGFRSGWSVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFESAESIVKSSAASFNFVVPNDDGFNQDDAEAAAWLIPNPNFGSKLMDAPDIKSREMFFSEMDPFLDFDYSNSFQNNNHNSAVNDSVVPVQTKPAPAPAPAPAPLMNHHSEGCFDIDFCRSKLSSFNYNSQSLSQSVSSSSLDVGVVPEGNTVSEISYPFGRNSSDSSGMVSGGSSQGQGVTQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYSPGAGLTVPGSLIMDTPYGVVPTF. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00852 376 CDD Bbox1_BBX-like 65 107 - -
Seca12g00852 376 Pfam CCT motif 299 341 IPR010402 GO:0005515
Seca12g00852 376 CDD Bbox1_BBX-like 21 64 - -
Seca12g00852 376 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Seca12g00852 376 SMART bboxneu5 65 107 IPR000315 GO:0008270
Seca12g00852 376 SMART bboxneu5 17 64 IPR000315 GO:0008270
Seca12g00852 376 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 358 IPR045281 GO:0009909
Seca12g00852 376 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Seca12g00852 376 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Seca12g00852 376 ProSiteProfiles CCT domain profile. 299 341 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00852 Seca-Chr12 7994774 7996944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00852 1 376 C2C2-CO-like Transcription Factor Family AT5G57660 52.564 6.43e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca12g00852 zf-B_box 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00852 - - gmx:100792197 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00852 12 7994774 7996944 Seca12g00852 12 7994774 7996944 ECH