Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00844 ATGGGGTCTGAAAAAAACGTGGGAAAATATCGGCTTGGAAGGACAATTGGAGAAGGCACATTCTCTAAGGTTAAGCTAGCTGTGAATGGCAACAATGGTGAGAAGGTTGCAATCAAAGTCATTGATAAGCATATGGTCATGGAAAGTAATCTTAAGAATCAGGTCCAAAGAGAAATTAGAACAATGAAGCTTCTGCATCATCCCAATATTGTCAGAATTCACGAGGTTATTGGCACAAAAACTAAGATATACATTGTGATGGAATATGTATCAGGAGGCCATCTATTGGACAAGCTGTCCTATTCCAAGAAGTTGAATGAATGTGAGGCCAGAAAAATATTCCAGCAACTAATTGATGCCGTGGACTACTGCCATAACAGAGGAGTTTATCATCGAGATCTCAAGCCAGAAAACTTGCTACTTGACAGCAAGGGAAATCTCAAAGTGTCTGATTTTGGATTAAGTGCACTTAAAAAGGTAGCAGCACCTAATGATGTCTTAAACACACGGTGTGGATCCCCATGCTATGTGGCACCTGAGCTGCTAATGAGCAAAGGGTATGAAGGAGCAGCTGCTGATGTATGGTCATGTGGGGTGATCCTTTATGAGTTACTTGCGGGTTTTCTACCTTTTGATGACCAGAACTTGATGAGCTTGTATCGTAAGATATGCAGAGCAGAATATGTATGTCCACCATGGTTTACTCAAAGTCAAAAGAAACTAATTGCCAAAATACTTGAACCACGTCCTGCAAAGCGGATAACTATGCCAGATATTATTGAAGATGAGTGGTTTCAAGCAGATTATAGTCCTGCTTGTGGTTCTGAATTGGATCTGATCATTAACTTTGGATGA 855 0.4047 MGSEKNVGKYRLGRTIGEGTFSKVKLAVNGNNGEKVAIKVIDKHMVMESNLKNQVQREIRTMKLLHHPNIVRIHEVIGTKTKIYIVMEYVSGGHLLDKLSYSKKLNECEARKIFQQLIDAVDYCHNRGVYHRDLKPENLLLDSKGNLKVSDFGLSALKKVAAPNDVLNTRCGSPCYVAPELLMSKGYEGAAADVWSCGVILYELLAGFLPFDDQNLMSLYRKICRAEYVCPPWFTQSQKKLIAKILEPRPAKRITMPDIIEDEWFQADYSPACGSELDLIINFG. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00844 284 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Seca12g00844 284 PIRSF ILK 2 263 - -
Seca12g00844 284 SUPERFAMILY Protein kinase-like (PK-like) 7 269 IPR011009 -
Seca12g00844 284 ProSiteProfiles Protein kinase domain profile. 10 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00844 284 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Seca12g00844 284 Gene3D Transferase(Phosphotransferase) domain 1 2 278 - -
Seca12g00844 284 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 267 - -
Seca12g00844 284 Pfam Protein kinase domain 10 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00844 284 FunFam Non-specific serine/threonine protein kinase 3 281 - -
Seca12g00844 284 FunFam Non-specific serine/threonine protein kinase 1 89 - -
Seca12g00844 284 SMART serkin_6 10 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00844 Seca-Chr12 7852485 7854745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00844 4 278 CBL-interacting serine-threonine protein kinases AT2G26980 58.545 1.20e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca12g00844 Pkinase 2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00844 - - mtr:11440772 491.886