Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00836 ATGGGTAGAGCTCCATGCTGTGACAAGGCCAACGTTAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTGCACTCAAAGCCTATATTGAAAAGAATGGAACTGGAGGCAATTGGATTGCTCTTCCTCAAAAAATTGATGTATTTAATTTCACAGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGGCCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTTTACATTAGCATTGGCAGCAGGTGGTCCATTATTGCTGCTCAGCTACCTGGAAGGACTGACAATGACATCAAGAACTATTGGAACACCAGATTGAAGAAGAAACTGCTTGGCAGGCGCAAACAATCTTCCAATAATAACCTCAACCCAAAGGACAATACAAATGGAATGATAGAAGAGAACTCTTATTCAAATGCCCTAAGTAGCTCTGCTCTTGAAAGACTCCAACTTCATATGCAACTTCAAACCCTTCAAAACCCTTTCTCTTTCTACAACAACCCTGCCCTGTGGCCCAAGTTGCATCCTTTCCAAGAAAAGATGATCCAACAGAGCATGCAATCTTTGAATGATACCTCCTCTGTGATGCAAAATGCTAATTTGCCTTCCCCTCATGTTGGACAAGGACAAAAACATGATGATCATGATCATCAGTTCTATAAACCTCCTACTACTGCTGATCATCATGATGGTGCAAAGATCAATAACACAGAGCAGGTTGGTCTTTTGGAGAATCCTTTGAGTAACAGTTTCATTGCAGTTTCTGGGAATAACATTAGCAACCCAATAATGCACTCAACAAGTAGTGTTATTGCACCAACAAGAGGAGAGACTGTTGAGCAGAGTAATAATGTGAGACTTCAACAACTTGGTGCACTGCAAACTGAGTTAGATGACATTCTCAACAACAGAACTACTACAATTGGTCAGGAAGATCATATGGCTGATCAGTTTGATTGTTTCAGAGAGATGAATGGCTCAAAAGACAGCTTCATTTGGTGGTCCAATGATTCTGCAGATACCAAATCAGCATCTTCAAACTCATGGGAGGATTCATCCAATAATCCAGTTCTTCTGCCAGAAGGGATGTTCCAAGATTATGAACTAGGTTACAGTCTCTAG 1161 0.4091 MGRAPCCDKANVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIDVFNFTGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSSNNNLNPKDNTNGMIEENSYSNALSSSALERLQLHMQLQTLQNPFSFYNNPALWPKLHPFQEKMIQQSMQSLNDTSSVMQNANLPSPHVGQGQKHDDHDHQFYKPPTTADHHDGAKINNTEQVGLLENPLSNSFIAVSGNNISNPIMHSTSSVIAPTRGETVEQSNNVRLQQLGALQTELDDILNNRTTTIGQEDHMADQFDCFREMNGSKDSFIWWSNDSADTKSASSNSWEDSSNNPVLLPEGMFQDYELGYSL. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00836 386 MobiDBLite consensus disorder prediction 208 245 - -
Seca12g00836 386 FunFam Transcription factor RAX3 7 74 - -
Seca12g00836 386 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Seca12g00836 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Seca12g00836 386 SUPERFAMILY Homeodomain-like 11 115 IPR009057 -
Seca12g00836 386 SMART sant 13 70 IPR001005 -
Seca12g00836 386 SMART sant 73 121 IPR001005 -
Seca12g00836 386 Gene3D - 7 74 - -
Seca12g00836 386 Gene3D - 76 147 - -
Seca12g00836 386 ProSiteProfiles Myb-like domain profile. 9 68 IPR001005 -
Seca12g00836 386 MobiDBLite consensus disorder prediction 128 146 - -
Seca12g00836 386 MobiDBLite consensus disorder prediction 125 146 - -
Seca12g00836 386 PANTHER OS09G0431300 PROTEIN 1 355 - -
Seca12g00836 386 MobiDBLite consensus disorder prediction 221 245 - -
Seca12g00836 386 CDD SANT 77 119 IPR001005 -
Seca12g00836 386 FunFam Transcription factor MYB36 76 145 - -
Seca12g00836 386 CDD SANT 16 68 IPR001005 -
Seca12g00836 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 68 IPR017930 -
Seca12g00836 386 Pfam Myb-like DNA-binding domain 14 68 IPR001005 -
Seca12g00836 386 Pfam Myb-like DNA-binding domain 75 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00836 Seca-Chr12 7785406 7786840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00836 1 190 MYB Transcription Factor Family AT5G57620 75.758 2.84e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g00836 Myb_DNA-binding 3.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00836 K09422 - gmx:778083 522.316