Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00834 ATGTGTAATAAAGGGTTTCAATGCTTGAGCGAGTCTGAGAGTGTAATTGATCATCGACAACACTACTTAATGGATAGTCCCACAGCGGTTCGATCGCCTGCTATCGGTTCAGGTTCAGGTTCGGGTTCAGCACCAAGTTCAAATGATGATAGCCGGCGTGTTAAATTCTTATGTAGCTTTCTAGGGAGCATAATGCCCCGTCCCCAAGATGGGAAGCTGCGTTATGTTGGTGGAGAGACACGTATTGTGAGTGTTCCAAGAGATATTAGCTATGAGGAGTTGATGGGGAAGATGAGAGAGTTGTATGAAGGGGTTGCTGTGTTGAAGTACCAGCAGCCTGATGAGGATCTTGATGCCCTTGTCTCTGTTGTCAATGATGATGATGTGATTAACATGATGGAAGAGTATGACAAATTGGGTTCTGGGGATGGATTCACTAGGCTCAGGATTTTCTTGTTTTCACAATCTGAGCAGGATGGTTCCACACACTTCATTGATGGGGATGACTCTGAGAGGAGGTATGTTGATGCATTAAATAGTTTAAATGATGCATCAGACTTTAGGAGGTTGCAACAAATGGAGTTTCCTATGATTGGCACTGTTGAGGATATTCATGTGGCTGATCAGTTCTTTAATCCAATCAGTGTGGAAAGTGGGATTCATAGCCAGAGAAGTGGGGAACTATCTATGTCACAGTACAATATGCATCATCTCTCCATCCCGCACCAACAACCTTTAGGCCAGAGGTATAATGAAATGGATTCTCCGTGGAATCCTGCCTATTACTCCCCTAGACATCATGGTCATCATGAATTTCCATCGTCTCCTTCTAGTACAAGATACCGTGTGCCATTTCCTCCTGAATTGCCAGATAAGTGCATTGATAGAGTGCCGGAAGAGTATGCGCGACATCATGTAAATCACCACCTTGTGTATGACAATCAACCGCAGTATACTGAAAATGTTGTGTGGGTGCCACATGGTGAGAAGTCAGGTTTTCCTGGCAATGTCATCCATGGCCCCCATGTTCTTGATGGGAATAGTATATGTGAGCATTGTCGCATGGGTTTTCAGAGAGGTCAACCGCATGTGGAGCATCCTAATATTAGTAATGGACTTCCACCGGTTGCTAATACATGTGTAGAATGCCCCGCAAATAGGGATACTTTCACCGTGAATGCTGATGCAAAGTTACATCCTGTAATTTATCCCAATGAGCCTAATAGTGATCATAGGTCTGTTTATAGTGATACTCAGAATCATGAGAGAGGGTGGGGTTTGCAGCATCAGACAACTGCTCGGGTTGAGGAATCAAGAGGACATGTCTCTGGAACTGGAAGAGTGAATGATCAGTATGTTGGTGATGTTCCTGGTATAAATTTCTCTCTTGGGAATGGCAGTGTGACTGATGGACATACTTTGTCCTCCAATTATGTTCAACAACGGACTGGACCTGAATTGGGGGCTGAACTGTTACCTGACCAAACTGTGGCTGCTATACCACATCTACAAATTCCTCCTATTGAAGAATGCAGCGTGCGGTATGGAAATACACCTTCTCCTTATGGAGTAGATAGTAATTACGCTGTGCCTCATGGGCATGCACCTGGTTATGCTTCCTGGAGAAACCCTCCAACTCCAGTTCATATTGGACCATCTTATGAGGCAAGTATTCCACCTCAGCAGGTGGATGGTGTGATTAATGCTGGATTAATCCGGGGAGAGGGCAGTCCAGGATTTTTCATTGGACCAGATAGTCAAAGTCCTTGGGTTGATTCCTCACAGAAATTGTCAGGACATGATGTGTCAGCCATCCCAGAATATCCTTATGCAAATGCTCTGAATTTGAATCCAAAAGCCCCTGGTCAGGAAAATCAACGTCCAATTACTTTAAATGCCATTCATCCCCCACAGGAGATAAATGCTGGTATCTGCTTGGAACCTGTGCAGCTACCAAAATCGTCTTTTAATATGGTTCACAATAATGAGGTTTTAAGAAATGATACTCATTTGACTGAAGCAATGAGTTTGCAATCTAAAAGTTTGCTTGAAGAAGGAAAAGAGGCAACAAACGAGGACAAGGCTAAAAACAATAAAGTGCCGAGTATATCTTTTTCAGAGCAAAATAAAATTGCCGAGAATGCATGTGAAGTTGCCGCTTCTGTTGAGCCTAATAATTCAAATTCAAAACCGGAAGTAGAGTGTGGACATGTTGAGAAAGTGGCTGATAAGGACCGTTCTGATCCAGAAGATTCTAAGCATTTAGTTGATCAATTCAACTTCTTGCCAGAGTTGATTGCTTCTGTAAAAAAGGCTGCATTAGAAGATAATAAGGAGGTGAAAGCTACAGCTGATGAACATAAGCATGCCAATTCTCAGATGCATAATTCAAATACCAAGGAAGAAACAGCGGATGAAGTAGAACCAGTGAATGCTCATGGTGATTTAGAATTGGACCCTGAAAATGACAATGTAGATACTTCTAAAATTGAGCCTACAAAGGCTGAGGCTGAAGCTATTGCTAGGGGATTGCAGACTATTAAAAATGATGATTTGGAGGAGATCCGCGAGCTAGGTTCTGGAACATATGGGGCTGTTTATCACGGGAAATGGAAAGGTTCTGATGTTGCCATTAAGAGGATAAAAGCCAGTTGTTTTGCTGGAAGACCTTCTGAAAGAGCAAGATTGATTGCAGATTTCTGGAAGGAGGCATTGATGCTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTCTATGGCATTGTTCGTGATGGGCCTGATGGTTCTTTAGCAACAGTGACAGAGTTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGAACAATAGATCGTCGTAAAAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATCTGCATGGAAAGAACATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGAGAGATCCACAACGGCCTGTTTGCAAGATCGGTGATTTGGGTTTATCAAAGGTTAAACAACACACTTTGGTGTCTGGAGGGGTACGGGGAACTTTGCCATGGATGGCCCCTGAACTTCTTAGCGGGAAAAGCAATATGGTGTCAGAGAAGATTGATGTTTACTCATTCGGGATAGTGATGTGGGAATTACTTACAGGGGATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAACAACACTCTGCGTCCTCAAATCCCATCATGGTGTGATCCTGAATGGAAGTCTCTGATGGAAAGTTGTTGGGCTTCTGACCCTGTAGAAAGGCCATCATTTTCAGAAATTTCCAAGAAGCTGAGGAGTATGGCTGCTGCAATGAATATGAAATAG 3378 0.4275 MCNKGFQCLSESESVIDHRQHYLMDSPTAVRSPAIGSGSGSGSAPSSNDDSRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVPRDISYEELMGKMRELYEGVAVLKYQQPDEDLDALVSVVNDDDVINMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSTHFIDGDDSERRYVDALNSLNDASDFRRLQQMEFPMIGTVEDIHVADQFFNPISVESGIHSQRSGELSMSQYNMHHLSIPHQQPLGQRYNEMDSPWNPAYYSPRHHGHHEFPSSPSSTRYRVPFPPELPDKCIDRVPEEYARHHVNHHLVYDNQPQYTENVVWVPHGEKSGFPGNVIHGPHVLDGNSICEHCRMGFQRGQPHVEHPNISNGLPPVANTCVECPANRDTFTVNADAKLHPVIYPNEPNSDHRSVYSDTQNHERGWGLQHQTTARVEESRGHVSGTGRVNDQYVGDVPGINFSLGNGSVTDGHTLSSNYVQQRTGPELGAELLPDQTVAAIPHLQIPPIEECSVRYGNTPSPYGVDSNYAVPHGHAPGYASWRNPPTPVHIGPSYEASIPPQQVDGVINAGLIRGEGSPGFFIGPDSQSPWVDSSQKLSGHDVSAIPEYPYANALNLNPKAPGQENQRPITLNAIHPPQEINAGICLEPVQLPKSSFNMVHNNEVLRNDTHLTEAMSLQSKSLLEEGKEATNEDKAKNNKVPSISFSEQNKIAENACEVAASVEPNNSNSKPEVECGHVEKVADKDRSDPEDSKHLVDQFNFLPELIASVKKAALEDNKEVKATADEHKHANSQMHNSNTKEETADEVEPVNAHGDLELDPENDNVDTSKIEPTKAEAEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNTLRPQIPSWCDPEWKSLMESCWASDPVERPSFSEISKKLRSMAAAMNMK. 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00834 1125 PRINTS Tyrosine kinase catalytic domain signature 934 947 IPR001245 GO:0004672|GO:0006468
Seca12g00834 1125 PRINTS Tyrosine kinase catalytic domain signature 1042 1064 IPR001245 GO:0004672|GO:0006468
Seca12g00834 1125 PRINTS Tyrosine kinase catalytic domain signature 971 989 IPR001245 GO:0004672|GO:0006468
Seca12g00834 1125 PRINTS Tyrosine kinase catalytic domain signature 1086 1108 IPR001245 GO:0004672|GO:0006468
Seca12g00834 1125 ProSiteProfiles Protein kinase domain profile. 852 1119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00834 1125 Gene3D Phosphorylase Kinase; domain 1 837 937 - -
Seca12g00834 1125 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 940 1125 - -
Seca12g00834 1125 Gene3D - 72 156 - -
Seca12g00834 1125 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 73 155 - -
Seca12g00834 1125 CDD PB1_UP2 57 153 - -
Seca12g00834 1125 MobiDBLite consensus disorder prediction 32 50 - -
Seca12g00834 1125 Pfam PB1 domain 69 154 IPR000270 GO:0005515
Seca12g00834 1125 ProSitePatterns Serine/Threonine protein kinases active-site signature. 977 989 IPR008271 GO:0004672|GO:0006468
Seca12g00834 1125 SMART serkin_6 852 1119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00834 1125 Pfam Protein tyrosine and serine/threonine kinase 853 1115 IPR001245 GO:0004672|GO:0006468
Seca12g00834 1125 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 845 939 - -
Seca12g00834 1125 SUPERFAMILY CAD & PB1 domains 70 159 - -
Seca12g00834 1125 MobiDBLite consensus disorder prediction 29 50 - -
Seca12g00834 1125 CDD STKc_MAP3K-like 858 1115 - -
Seca12g00834 1125 ProSitePatterns Protein kinases ATP-binding region signature. 858 879 IPR017441 GO:0005524
Seca12g00834 1125 PANTHER SERINE-THREONINE PROTEIN KINASE 120 1117 - -
Seca12g00834 1125 MobiDBLite consensus disorder prediction 781 827 - -
Seca12g00834 1125 Gene3D Transferase(Phosphotransferase) domain 1 938 1125 - -
Seca12g00834 1125 SMART PB1_new 68 153 IPR000270 GO:0005515
Seca12g00834 1125 SUPERFAMILY Protein kinase-like (PK-like) 844 1113 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00834 Seca-Chr12 7771381 7778107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00834 48 1125 MAP Kinase Kinase Kinase AT5G57610 54.870 0.0 1079
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca12g00834 PK_Tyr_Ser-Thr 2.1e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00834 - - gmx:100779077 1855.11