Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00820 ATGAATTTCCATCCTAATACTTCTCTTCATCACCTAACCCAACCAGATGAGAATCATCTCAATCTAGATCTTCTCCTTGAGCCTTCTTCTTCTTCATCATCTTCACCCATTAGTCCCATAGAGCCTAGAGTGTTCTCATGCAACTATTGCCAGAGAAAGTTTTACAGCTCTCAAGCACTTGGGGGACACCAAAATGCTCATAAGCTTGAAAGGACACTTGCTAAGAAGAGCAGGGAGCTGAGTTCTGCCATGCAGTCTTATGGAGGAGCAGAGCATAACAGATCAAACTTCAGTTCTTCACACCATCTTGGGGTCCTTCAGGATAACCAAGGAGGACAAGGTGTGAGTGTGAGGCTTGGTGGAAGAAGAGACTTTAGTACTTATGGTTCTTCTAAGGAAGGTGTAGTTGTTGGTTCTTCTTGGTCCTCCAGGGGTTATGCTTCTGAACATGTTCAAGAGGATATTAGCCAACTTGACTTGTCCTTAAGGCTTTGA 495 0.4384 MNFHPNTSLHHLTQPDENHLNLDLLLEPSSSSSSSPISPIEPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSAMQSYGGAEHNRSNFSSSHHLGVLQDNQGGQGVSVRLGGRRDFSTYGSSKEGVVVGSSWSSRGYASEHVQEDISQLDLSLRL. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00820 164 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Seca12g00820 164 Gene3D Classic Zinc Finger 30 103 - -
Seca12g00820 164 FunFam Zinc finger protein 2 25 93 - -
Seca12g00820 164 MobiDBLite consensus disorder prediction 86 114 - -
Seca12g00820 164 Coils Coil 66 86 - -
Seca12g00820 164 SUPERFAMILY beta-beta-alpha zinc fingers 42 72 IPR036236 -
Seca12g00820 164 MobiDBLite consensus disorder prediction 86 118 - -
Seca12g00820 164 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 102 IPR044246 GO:0009788
Seca12g00820 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00820 Seca-Chr12 7629839 7630333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00820 1 164 C2H2 Transcription Factor Family AT5G57520 47.191 3.54e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g00820 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00820 - - vra:106768043 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00820 12 7629839 7630333 Seca12g00820 12 7629839 7630333 ECH