Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00819 ATGTCACCCTCTCCACCACAAGAATTCATCTTCCGCTCCAAACTCCCCGACATTCCCATCCCCACTCACCTTCCATTACACTCTTACTGTTTCCAAAACCTCTCCAACTTTCAACACCGTCCATGCCTCATCGACGGCGACACCGGCGAGACCCTCACCTACGCCGACGTCCACCTCACCTCCCGCAAAGTCGCCGCCGGCCTCCACTCCATCGGCATCCGTAAAGGTGACGTCATCATGCTCGTCCTCCGCAACTGTTCCCAATTCGCCCTCGCCTTCCTCGGAGCCTCCTTCGCCGGCGCCGCCATCACCACCGCAAATCCGTTCTACACGGCGGCAGAGCTCGCGAAGCAAGCAACAGCAACCAAGACCAAACTCATCATAACACAGGCAGCGTTCGTAGAGAAAATCAAGGATTTCTCGGAAAACAATGATATCAAAGTGATATGCATTGATCCTTCAGGAAACAAGGACGTTCTGCATTTCTCTGTTTTAACAAACGCTGACGAAAACGAAGCGCCTGTTGTTGAGATCAGTCCAGACGACGTCGTTGCGCTTCCGTTTTCTTCCGGCACGTCAGGGCTTCCTAAAGGTGTGATGTTAACGCACAGAAACTTGGTGACGACGATTGCGCAGTTAGTTGACGGCGAAAACCCGCACCAGTATACTCACTCAGAGGATGTGCTTCTGTGTGTGCTTCCTATGTTTCATATTTATGCGCTTAACTCTATTTTGCTGTGTGGGATTCGTGCTGGTGCGGCGGTGTTGACTGTGCAGAAGTTTGAGATTACGACGCTGTTGGAGCTGATTCAGAAATACAAGGTGACGGTTGCGTCGGTTGTGCCACCTATCGTTTTGGCGTTGGTTAAGAGTGGTGAATCTCATCGATACGACCTGTCGTCTATTCGGGTGATGATAACTGGTGCCGCACCCATGGGAATGGAACTCGAAGAAGCTGTGAAGGCAAGGCTACCAAAAGCCATACTTGGACAGGGATACGGGATGACAGAGGCAGGGCCATTGGCCATTAGCTTGGCATTTGCAAAGGAGCCATTCAAGACAAAAGCAGGTGCTTGCGGGACAGTCGTCAGAAACGCTGAGATGAAAATCGTGGACACGGAGACAGGCGCTTCCCTTCCAAGAAACAACGCGGGTGAAATTTGCATTAGAGGCACAAAGAATATGAAAGGATATTTAAATGACCCAGAGGCCACAGAGAGAACTATAGACAAAGAAGGATGGTTACATACAGGTGATATTGGTTTCATTGACGATGATGATGAACTCTTCATTGTTGATCGATTAAAAGAGCTTATCAAATACAAAGGATTCCAAGTAGCTCCAGCTGAGCTCGAAGCGATGTTGATTGCCCACCCAAACATCTCTGATGCTGCCGTTGTACCGTAA 1407 0.4989 MSPSPPQEFIFRSKLPDIPIPTHLPLHSYCFQNLSNFQHRPCLIDGDTGETLTYADVHLTSRKVAAGLHSIGIRKGDVIMLVLRNCSQFALAFLGASFAGAAITTANPFYTAAELAKQATATKTKLIITQAAFVEKIKDFSENNDIKVICIDPSGNKDVLHFSVLTNADENEAPVVEISPDDVVALPFSSGTSGLPKGVMLTHRNLVTTIAQLVDGENPHQYTHSEDVLLCVLPMFHIYALNSILLCGIRAGAAVLTVQKFEITTLLELIQKYKVTVASVVPPIVLALVKSGESHRYDLSSIRVMITGAAPMGMELEEAVKARLPKAILGQGYGMTEAGPLAISLAFAKEPFKTKAGACGTVVRNAEMKIVDTETGASLPRNNAGEICIRGTKNMKGYLNDPEATERTIDKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPNISDAAVVP. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00819 468 Gene3D - 436 468 IPR045851 -
Seca12g00819 468 Gene3D - 5 435 IPR042099 -
Seca12g00819 468 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 468 - -
Seca12g00819 468 Pfam AMP-binding enzyme 34 441 IPR000873 -
Seca12g00819 468 SUPERFAMILY Acetyl-CoA synthetase-like 14 468 - -
Seca12g00819 468 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Seca12g00819 468 FunFam Long-chain-fatty-acid--CoA ligase FadD 12 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00819 Seca-Chr12 7612747 7619446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00819 7 467 Monolignol Biosynthesis Gene Families AT3G21240 65.161 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00819 K01904 - gmx:548034 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00819 12 7612747 7619446 Seca12g00819 12 7612747 7619446 ECH