LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g00818	ATGGAACCAACACACCTTCATCGTGACTTCATTTTCCGTTCCAAACTCCCCAACATTTACATCCCAACGCACCTCCCACTCCACACTTACTGCTTCCAAAACCTTTCCCAATTCAAAGACCGTCCATGCCTCATCAACGCCAACACCGCCGAGACCTTCACCTACGCTGACGTGGAACTCACCGCCCGCAAAGTCGCCGCCGGACTCAACAACCTCGGCATCCAACAAGGCGACGTCATCCTCCTCCTCCTCCAGAATTGCCCCCAATTCGTCTTCGCATTCCTCGGCGCCTCCTACCGCGGCGCCACCGTCACCACCGCCAACCCGTTCTACACTCCGGCGGAGGTGGCAAAACAGGCCACTGCCTCAAACGCAAAGCTCATCATAACTCAATCCTCATACATTGACAAAGTGAAGGATTTCGCCAGAGAAAATGACATCAAAGTGATATGCATTGACTCACCGCCGGAAGGTTTTTTACATTTCTCGGAGTTAACGGAGGCTGACGAGGCTGACATTCCCGCCGTGAAAATTTCCCCAGACGACGTCGTTGCGTTACCGTATTCGTCTGGCACAACGGGGCTTCCGAAAGGGGTTATGTTAACACACAAAGGATTGGTTACTAGCGTGGCGCAACAGGTTGATGGGGAGAATCCGAACCTTTATTTTCACAGCAAGGATGTGTTGCTGTGCGTGCTGCCTCTCTTCCATATTTATTCGCTTAACTCTGTTTTGCTTTGTGGTCTTCGAGTTGGCGCTGCCATTCTCATCATGCAGAAATTTGAGATCGTTGCGCTGTTGGGGTCTGTGCAAAAACACAAGGTGAGCATTGCGCCGTTTGTGCCACCCATCGTTTTGGCGATTGCTAAGAGCCCTGAGGTGGAGCGATACGACTTGTCGTCTATTCGGATGATTATGTCTGGTGCGGCGCCCATGGGAAAGGAACTTGAGGATGCTGTCAGAGCCAAGCTTCCCGACGCCACGTTCGGTCAGGGTTACGGAATGACAGAGGCAGGACCAGTGCTTTCAATGTGCTTAGCGTTTGCAAAGGAGCCAGTGGAGGTGAAATCAGGTGCATGTGGGACAGTTGTAAGAAACGCAGATATGAAGATCGTTGACCCTGAGACGGGGGCTTCGCTTCCAAGGAATCAAGCTGGTGAGATTTGCATCAGAGGCAACCAGATCATGAAAGGTATCTCTTGTCTCTTTGTTTGGACAGGTTACCTAAATGACACAGAGGCGACAGAAAGAACTATAGACAAAGAGGGATGGTTGCATACAGGTGATATTGGTTATATTGATGATGATGATGAGCTTTTCATCGTTGATCGGTTGAAGGAGCTGATCAAATATAAAGGGTTCCAAGTGGCTCCAGCTGAGCTCGAAGCCATGCTGATTGCTCACCCAAACATTTCCGATGCTGCTGTTGTACCCATGCAAGATGAGGCTGCAGGAGAAGTTCCGGTTGCATTTGTTGTACGATCAAACGGTTCTAAAATCTCAGAGGATGAAATCAAGCTATATATCTCAAAACAGGTTGTATTTTACAAGAGAATCAATAAGGTTTTCTTTGTGGGCTCAATTCCAAAGGCACCCTCAGGCAAGATTTTGCGAAAAGACCTCAGGGCAAGGCTCGCGGCCGGTCTCGTCATTTAG	1656	0.4964	MEPTHLHRDFIFRSKLPNIYIPTHLPLHTYCFQNLSQFKDRPCLINANTAETFTYADVELTARKVAAGLNNLGIQQGDVILLLLQNCPQFVFAFLGASYRGATVTTANPFYTPAEVAKQATASNAKLIITQSSYIDKVKDFARENDIKVICIDSPPEGFLHFSELTEADEADIPAVKISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSKDVLLCVLPLFHIYSLNSVLLCGLRVGAAILIMQKFEIVALLGSVQKHKVSIAPFVPPIVLAIAKSPEVERYDLSSIRMIMSGAAPMGKELEDAVRAKLPDATFGQGYGMTEAGPVLSMCLAFAKEPVEVKSGACGTVVRNADMKIVDPETGASLPRNQAGEICIRGNQIMKGISCLFVWTGYLNDTEATERTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPNISDAAVVPMQDEAAGEVPVAFVVRSNGSKISEDEIKLYISKQVVFYKRINKVFFVGSIPKAPSGKILRKDLRARLAAGLVI.	552

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g00818	551	CDD	4CL	21	541	-	-
	Seca12g00818	551	Pfam	AMP-binding enzyme C-terminal domain	460	535	IPR025110	-
	Seca12g00818	551	FunFam	4-coumarate--CoA ligase 2	447	548	-	-
	Seca12g00818	551	Gene3D	-	446	547	IPR045851	-
	Seca12g00818	551	PANTHER	LONG-CHAIN-FATTY-ACID--COA LIGASE	8	543	-	-
	Seca12g00818	551	Pfam	AMP-binding enzyme	33	451	IPR000873	-
	Seca12g00818	551	Gene3D	-	4	445	IPR042099	-
	Seca12g00818	551	ProSitePatterns	Putative AMP-binding domain signature.	186	197	IPR020845	-
	Seca12g00818	551	FunFam	Long-chain-fatty-acid--CoA ligase FadD	13	446	-	-
	Seca12g00818	551	SUPERFAMILY	Acetyl-CoA synthetase-like	7	547	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g00818	Seca-Chr12	7600032	7606629	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g00818	7	513	Monolignol Biosynthesis Gene Families	AT1G51680	69.574	0.0	716

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g00818	K01904		-	gmx:100779668	937.562

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