Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00811 ATGGGAACTGATGAGGAGTGCTCCATTGTTCTCGAGTTATCTGAAAATGATCCTTTCTTTGATAAAAAGAAGAAATTATTACAAAGTAAGGGGTTTAGTCCCAAGGAACGGATATGTCTCACGAGCTCCTCAGAACCTGGTTGGATGAATGCTAGTGCAAAGATTTTACTCCAGATTGCACGAATCATACAGTTAAATGAGCTGGAGCTTTATTTTGCTGAAGACGATGCATGCACATCAGTGGAGTTTTACAGTGCCAGGAATGAGCTGGAGGCTCTCAATTTAATTGTCCTGCTCATTGACACATCACTTTCTAGTTGCACACATCTCCATACAAATATCTTGCAAGGGTTACGACAAACAATTCTTGATTTAATTTCTGATTTTGGGGACAAAAATAGCATGAAGGGAGTAGTTGAAAAGAACCACAGCTGTGACAAAGAAGAATGCCTGATAGAGTGGGGTGAAAGCAATGGGGTAAAGACCCAGTTAAAGATAGCTTATGTTGAAGGAGCAGGTCGGGGTGCGATAGCAAGAAGAGATCTAAAAGTTGGAGACATTGCTTTAGAAATTCCTGTGTCCGTTATCATTTCTGAGGAGGTCGTGCATGAAACTGATATGTATCGTGTCTTAAAAGAGGTTGATGGCATATCATCTGAGACAATATTGCTATTATGGAGCATGAAAGAGAAGTATAACTGTGATTCAAAATTCAAAGTTTACTTTGACACACTTCCAGAAAAATTTAATACAGGATTGAGTTTTGGTATTGATGCAATTACAATGCTAGATGGAACCCTGCTGTTTGAAGAGATAATGCAAGCAAGACAGCACCTGCATGCTCAATATGATGAGTTGTTTCCGGCTTTGTGCAATGAGTTTCCTGATATATTTCCACGAGAGCTGTACACGTGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTACTCCAATAGCATGACGATAATGTATTCTGATGGAAAGCTGAGAACATGCTTGATTCCTATTGCTGGCTTTCTTAATCATTCATTGTGCCCACATGTTATGCACTATGGCAAAGTAGATCCTTCAACAAATTCATTGAAATTTCGTCTGTCAAGACCATGCAGATCTGGAGAAGAATGCTGCTTAAGCTATGGGAACTACTCCAGCTCTCATCTAATTACCTTTTATGGTTTCTTACCTGAAGGAGACAACCCGTATGATGTCATTCCGTTAGACATTGATGGTTATGATGTTGATTCTATTGAGGATAAACCCGTGTCCAACTGGACGACTCACATGGTGCGTGGTACTTGGCTCTCCAACAATCACAGCACATTCTATTATGGCTTACCCGCTCCATTATTAGAGCATCTTCGGAGATCTCGAAGTCCCATGCTGCGAACTAAGACTTTCGTACTGTTCTTTTTTCCTTCCAATCTTAATTTATCTTTAAACTTCTATATTTCACGGGTCATCCTTCTTCTGCTATAA 1476 0.3991 MGTDEECSIVLELSENDPFFDKKKKLLQSKGFSPKERICLTSSSEPGWMNASAKILLQIARIIQLNELELYFAEDDACTSVEFYSARNELEALNLIVLLIDTSLSSCTHLHTNILQGLRQTILDLISDFGDKNSMKGVVEKNHSCDKEECLIEWGESNGVKTQLKIAYVEGAGRGAIARRDLKVGDIALEIPVSVIISEEVVHETDMYRVLKEVDGISSETILLLWSMKEKYNCDSKFKVYFDTLPEKFNTGLSFGIDAITMLDGTLLFEEIMQARQHLHAQYDELFPALCNEFPDIFPRELYTWEKFLWACELWYSNSMTIMYSDGKLRTCLIPIAGFLNHSLCPHVMHYGKVDPSTNSLKFRLSRPCRSGEECCLSYGNYSSSHLITFYGFLPEGDNPYDVIPLDIDGYDVDSIEDKPVSNWTTHMVRGTWLSNNHSTFYYGLPAPLLEHLRRSRSPMLRTKTFVLFFFPSNLNLSLNFYISRVILLLL. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00811 491 SUPERFAMILY SET domain 148 401 IPR046341 -
Seca12g00811 491 Pfam Rubisco LSMT substrate-binding 15 106 IPR015353 -
Seca12g00811 491 CDD SET_LSMT 164 394 - -
Seca12g00811 491 ProSiteProfiles SET domain profile. 162 380 IPR001214 GO:0005515
Seca12g00811 491 FunFam Transcription factor, E2F and DP-related 146 394 - -
Seca12g00811 491 FunFam SET domain-containing protein 4 142 - -
Seca12g00811 491 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 145 453 - -
Seca12g00811 491 Pfam SET domain 173 380 IPR001214 GO:0005515
Seca12g00811 491 Gene3D set domain protein methyltransferase, domain 1 145 394 - -
Seca12g00811 491 Gene3D - 3 114 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00811 Seca-Chr12 7495514 7504005 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca12g00811 SET 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00811 K19199 - gmx:100778605 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00811 12 7495514 7504005 Seca12g00811 12 7495514 7504005 ECH