Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00792 ATGGACTCATCTTCCTCTTCACCGCACACGCACAACAATCACCACTCTCTCGCTTTCTCTCTTTCCAATCACTTTCCTAATCCTTCCCCTTCACACTCTTCCACCTCTCCCCTCTCCCTTTTCCACTCCTTCACCTATCCTTCCTCCACACCATCCCTCACCCTCACAGGAAGCAACGCCACACCGGAGGCCACGAACAGCACCGTGGGAGGAGCAACAAATCTCTCCATCTTCACCGGTGAACCAAAGTTCGAGGACTTTCTAGGCGGTTCCGTCACAAGCACCACCACCACGACGTGTGCACCCACACAGCTTCCGCAGTTCTCCACCGACAACGACCTATACGATACGGAGCTGAAGACAACCATAGCAGCTTGCTTCCCTCGCGGCTTCGGCGCCGAACCAAGCACCGAGCCTCAAAAGCCATCTCCCAAGAAAACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGTGGCGTCACCCGACATAGATGGACTGGAAGATATGAAGCTCATCTATGGGATAACAGTTGTAGAAGGGAAGGACAGAGTCGGAAAGGAAGGCAAGATTCTGACCGTGCTTTTGCTTTTGTTTATGTGGATGTGATGATTGCTCACCCGTGGGATCCTTTGGTCATTATGCGGTTTCAGTTTATTTGGATTCTTCCACTCATTAAGCTTTTAATCATTTTGGTCATGAAAATTATAGGTGGTTATGACAAGGAAGAGAAGGCGGCCAGAGCTTACGATCTTGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTCCCTATTTCCAACTATGAGAAGGAACTGGAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTCTCTAGAGGAGCCTCTATTTACAGAGGAGTGACCAGGCACCACCAGCATGGGCGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACACAAGAAGAAGCTGCCGAGGCGTATGACATTGCAGCTATAAAATTCAGAGGACTAAATGCAGTAACAAACTTCGACATGAGTCGCTACGACGTAAAGAGCATTGCAAGTAGTTCTCTTCCCATTGGGGGATTATCAAGCAAGAACAAGAATTCCACAGATTCTTCTCTATCAGCTGATAATAATAGCAAAAGCCATGAGGCAATAAGTCGATCCGATGAACGAGATCCATCTTCAACAACTTCCTTTGCATCACAGCAACAACCTTCAACTACCTTAAGCTTTGCCATTCCCATCAAGCAAGACCCTTCCGATTACTGGTCCATCCTCGGCTACCATAATCCTCCTCCCCTTGATCACACCACTGCCGTCAGTAGCACAGTACCTTTCCAGATGGACTTCTCAAATAACAGTGATAACAATAATGCATCGTTTTTCAGTGGAGGAGGAGGAATCTTTGTCCAAAGTGGAAGCAGTGGTTCTTCTTCTGCTTCAAGTTCTTCAATCCCATTGGCTACTCCCATATTTGCCTTAAATAGTAGTAATGCTACTAGTTATGAGAGTGGTGGTGGATATGGGAACAGCTGGATAGGAGGTGGTAGCGTGCACACATTCCAAACTCATGCAAAACCGAGTCTGTTTCAAACGCCAATATTTGGGATGGAATGA 1674 0.4803 MDSSSSSPHTHNNHHSLAFSLSNHFPNPSPSHSSTSPLSLFHSFTYPSSTPSLTLTGSNATPEATNSTVGGATNLSIFTGEPKFEDFLGGSVTSTTTTTCAPTQLPQFSTDNDLYDTELKTTIAACFPRGFGAEPSTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQDSDRAFAFVYVDVMIAHPWDPLVIMRFQFIWILPLIKLLIILVMKIIGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIASSSLPIGGLSSKNKNSTDSSLSADNNSKSHEAISRSDERDPSSTTSFASQQQPSTTLSFAIPIKQDPSDYWSILGYHNPPPLDHTTAVSSTVPFQMDFSNNSDNNNASFFSGGGGIFVQSGSSGSSSASSSSIPLATPIFALNSSNATSYESGGGYGNSWIGGGSVHTFQTHAKPSLFQTPIFGME. 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00792 557 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 82 448 - -
Seca12g00792 557 ProSiteProfiles AP2/ERF domain profile. 303 361 IPR001471 GO:0003700|GO:0006355
Seca12g00792 557 ProSiteProfiles AP2/ERF domain profile. 157 267 IPR001471 GO:0003700|GO:0006355
Seca12g00792 557 Gene3D AP2/ERF domain 157 269 IPR036955 GO:0003700|GO:0006355
Seca12g00792 557 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g00792 557 SMART rav1_2 303 367 IPR001471 GO:0003700|GO:0006355
Seca12g00792 557 SMART rav1_2 157 273 IPR001471 GO:0003700|GO:0006355
Seca12g00792 557 MobiDBLite consensus disorder prediction 378 427 - -
Seca12g00792 557 MobiDBLite consensus disorder prediction 378 400 - -
Seca12g00792 557 CDD AP2 302 363 IPR001471 GO:0003700|GO:0006355
Seca12g00792 557 Gene3D AP2/ERF domain 303 363 IPR036955 GO:0003700|GO:0006355
Seca12g00792 557 MobiDBLite consensus disorder prediction 410 427 - -
Seca12g00792 557 PRINTS Ethylene responsive element binding protein signature 249 269 IPR001471 GO:0003700|GO:0006355
Seca12g00792 557 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Seca12g00792 557 FunFam AP2-like ethylene-responsive transcription factor 302 363 - -
Seca12g00792 557 SUPERFAMILY DNA-binding domain 302 363 IPR016177 GO:0003677
Seca12g00792 557 SUPERFAMILY DNA-binding domain 236 269 IPR016177 GO:0003677
Seca12g00792 557 CDD AP2 156 269 IPR001471 GO:0003700|GO:0006355
Seca12g00792 557 Pfam AP2 domain 303 353 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00792 Seca-Chr12 7330694 7334225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00792 113 557 AP2-EREBP Transcription Factor Family AT5G57390 50.610 1.24e-132 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g00792 AP2 3.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00792 K09285 - gmx:100797828 649.432