Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00791 ATGGCTACTGATTCGTCTTTCGAAGGGGTTGCTCTTGATCCTTCTAAATGCAGTAAACTGAGCATGGAGGAAAAAAGAGAACTAGTATATGAAGTATCCAAGTGGTCTCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGTCAAGAGATTTTGCAAATCTTGTGTGCAGAGATGGGAAAAGAAAGGAAGTATACCGGGCTTACAAAGTTGAAAATTATAGAAAACCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGCCATGAAATCGCCACAGACCCTGAATCGAATTCTTCTCCTGCACATGGTCAGAAACCTGCTAAAAGGCAGAGAAAAACTGAGAATCCATCTCGATTACCTGTTCCTGCAAACAATGATTCAGTCAGTAATGGTGGTGATGTGAGTAATACCATATACTGCAAAAACTCGGCGTGCAAGGCTACCCTAAATCAAGCAGATACGTTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGACAACAAGGACCCTAGCCTGTGGTTAATATGTAGCTCTGAAACTCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGGAATTGGCAAAGATGGTGAACGTCCCAAGCTTGATGGAGGCTTCTACTGTGTCTCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTGGCAAAGGATACCAGACGTGTAGACATACTTTGTTATCGTGTCTCCTTAAGCCAAAGACTTTTACAAGGGACTGAAATATATCAAGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCAGAAGTGGGCCCACTGATTGGCTCACCAGTGAAGATTGGTAGAGGGATTGTGAACAGGCTTTCATCAGGACCTGAGGTTCAGAAACTCTGTGGTCTTGCTCTGGAATCACTTGATTCACTGCTTTCTGAAAGGATCTTGTCTCAGTCATCCAATCCAACTATTCAAGATGCACATTTACTGGCTCCAAATATGGTGAGGTTTGAAGATGTCACTGCGACATCCCTCACTGTTATTTTGGGTTCTGAAGATTCTTCCGGAGACAATGTTGCTGGTTACACCTTATGGCATCGCAAAGCTGATGATGTGGACTACCCTGTGGAGCCGACTTGTACATTGCTTTTACCAAATAGAAGGTTGAGTATCAGGAGTCTACTTCCTGCTACAGAATACAGTTTCAAAGTTGTTTCCAATGATTCAAGGGAGTTGTGTACATGTGAAGTTCAAGTCTCAACTGAGCATGGTGAGGATGAAGTCCCCAATTGCTCAGCAACAGAAAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCTTCATCAGTGGAAGATGAAACTAATAACAGTAACCCATATAGTGACCAGACCGATAATCGAGCTGATAATTATCATTCTTATCACAAGGACAGTGACAAGCTTGCTTCTGGAAATTTATCTAATGATGCAATCAACTGTTCCAATATGGGTGTAGTGGGACTTCCCACTGATGCAGATTCCTTGTCAGACAAGCAGCATGCTGTAGGAATGACTGGCTCTGTACCTAGCTCTGATGTACTAAAGCTTGAAAACAAGCATTCATCAGAGGAACAGGTTACTGAGGACATGAGCACTGATGATGGATTGAATTCTCCAGTTCTAACAGGAAGGGAGCATGTGCATGTGCATGTGCCATTAATAGGTAGCTCAGAAGGAGGGTTGCCTAATACTCCCTGCAAGTTGGAAATACTTAAAGATGGGCCAGGAAGAAATGGGAGATCTAAATCCAGTGGCAAAGATCAAGAAAATGGATCTGGGAAAAGGGTGGGGCCCCAAGATGGAAGTACTTCCAAAAAAAGAAGTGGAGAAAGGCAAGATGAGGGCTGCGCCGCCAATGGTTTTTCAGATCGGGATTTTGAGTATTATGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGACACATAGAAAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCAACCCCTCAAGAAGTAAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTAGACACCTTCTCAGAATGTATATCAAGCAAGAGAACATCAGTGGTGCCTGCAGGGTTCTGCATGAAGCTTTGGCATTGA 2226 0.4259 MATDSSFEGVALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHEIATDPESNSSPAHGQKPAKRQRKTENPSRLPVPANNDSVSNGGDVSNTIYCKNSACKATLNQADTFCKRCSCCICHQYDDNKDPSLWLICSSETPFPGVSCGLSCHLECALKHDGSGIGKDGERPKLDGGFYCVSCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEIYQELYKIVDEAVKKLEPEVGPLIGSPVKIGRGIVNRLSSGPEVQKLCGLALESLDSLLSERILSQSSNPTIQDAHLLAPNMVRFEDVTATSLTVILGSEDSSGDNVAGYTLWHRKADDVDYPVEPTCTLLLPNRRLSIRSLLPATEYSFKVVSNDSRELCTCEVQVSTEHGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNSNPYSDQTDNRADNYHSYHKDSDKLASGNLSNDAINCSNMGVVGLPTDADSLSDKQHAVGMTGSVPSSDVLKLENKHSSEEQVTEDMSTDDGLNSPVLTGREHVHVHVPLIGSSEGGLPNTPCKLEILKDGPGRNGRSKSSGKDQENGSGKRVGPQDGSTSKKRSGERQDEGCAANGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRTSVVPAGFCMKLWH. 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00791 741 Gene3D Immunoglobulins 326 428 IPR013783 -
Seca12g00791 741 MobiDBLite consensus disorder prediction 584 647 - -
Seca12g00791 741 MobiDBLite consensus disorder prediction 604 620 - -
Seca12g00791 741 CDD FN3 346 420 IPR003961 GO:0005515
Seca12g00791 741 MobiDBLite consensus disorder prediction 88 131 - -
Seca12g00791 741 ProSiteProfiles Fibronectin type-III domain profile. 346 442 IPR003961 GO:0005515
Seca12g00791 741 MobiDBLite consensus disorder prediction 631 647 - -
Seca12g00791 741 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 741 IPR044514 GO:0010048|GO:0040029
Seca12g00791 741 MobiDBLite consensus disorder prediction 440 485 - -
Seca12g00791 741 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Seca12g00791 741 SUPERFAMILY Fibronectin type III 346 422 IPR036116 GO:0005515
Seca12g00791 741 CDD PHD_VIN3_plant 161 226 - -
Seca12g00791 741 MobiDBLite consensus disorder prediction 439 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00791 Seca-Chr12 7281891 7286909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00791 4 486 PHD Gene Family AT4G30200 54.633 2.47e-166 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00791 - - gmx:100794721 1320.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00791 12 7281891 7286909 Seca12g00791 12 7281891 7286909 ECH