Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00787 ATGGGAATAGAGCTTGAATATGAGGTAGCAGCCTATGAATTTTACAATGAGTGTAGCAGGAGAACTGGTTTTGGTGTTCGTCGAGAATATGGAAATAAAAGCAAAAAAGATGGAATTCTCACTTCAAGAAGATTTTCATGCTTTAAAGAGGGTAAACGAGGCAATAACAAACGAGACCACTTGACAAAAGTCCCTAGAGCAGAAACCAGGACAGGATGCGAAGCACGCATGGTTATTTCACTTGATCGGAAGATTAGGAAATACAAGGTTTATGACTTTGTAGCTCAACATAATCACCCTCTTCAACCACTGGAATATGTTCATATGATTCGCTCTCATCGACGCATATCTGAATCACAAGCATCACAAATTGTATTGGCTGATGAATCTGGACTAAAACCAACAGATTTTCATGAATATATATCCAAGCAAGCTGGTGGAATATACACTATTGGTTATACAAGAAAAGACCATAAGAATTACCTTCGAACTAGAATGAAAGAGTCATTAAGGGCAACATTGTTTTATGATGAAACAATCCCTTCTTTTCAATGGCTATTTGAAACTTTTCTCAAAGCAATGGGTGGAGAAAAGCCTAAAATCATTCTAACGGATCAAAATGCAGCAATGGCTAAGGCTATTTCTTCAGTTATGCCAGAAACATTTCATGGATTATGCACTTGGCATATAAGAGAAAATGCCTTAAGGCATGTGAACCATCTATATCAAAAGAGTTCACAATTTTGCTCACACTTTGAAGCATGCACTGATCAACACGAAGAGGAAGATTTGAATTTGGTACAATTTTTCACACACTTTGAAAGGGTTGTCAATGGCAAACGGTACAATGAGTCAGAAGCAAAGTATGAATCAAGGCATAAGCTCCCCATATTGAAAATGAAAAAGGCCCTTATGCTTCTACAAGTTGGAAACATTTATACTCCAAAACTTTTTGAGGAGTTCCAAGAGGAATACGAGGATTATCAAGGCACATGCATAAAGGAATTGAAAGAAGGAACATATGTTGTTACAAATTATAATGACGACAAAGAACGAATAGTAATGGGGCATCTAGTGGATCAAAGGGCTGCTTGTGATTGTCATAAATTTGAGACTCACGGTATCTTATGCAGTCATGCTTTGAAATTTTTGGATGTGATGAATATTAAGCTACTTCCTCAACACTATATATTAAAGCGGTGGACAAGAGATGCAAGGTTGGGAAGAAATCGAGATTGGAAAGGACAACACATTGAATTGGACATAAAAGCACATTTCATGAAGCGACACAATGAGTTGTGTTCTCGAATGGTTGATTTGACAAACAAAGCATCTCAATCTCATCAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAATAAAATAATTGATGATATGTTGGCTAAAAATTGCACCGATGAAGTGTCAAGTGGAATGTGTCATGGCGACCAAGGCTTCAAAAAATCCTCTGACAATGGCACGACGGAGATGGAGCGTCTCTATTTCTTCAGTTGA 1521 0.3734 MGIELEYEVAAYEFYNECSRRTGFGVRREYGNKSKKDGILTSRRFSCFKEGKRGNNKRDHLTKVPRAETRTGCEARMVISLDRKIRKYKVYDFVAQHNHPLQPLEYVHMIRSHRRISESQASQIVLADESGLKPTDFHEYISKQAGGIYTIGYTRKDHKNYLRTRMKESLRATLFYDETIPSFQWLFETFLKAMGGEKPKIILTDQNAAMAKAISSVMPETFHGLCTWHIRENALRHVNHLYQKSSQFCSHFEACTDQHEEEDLNLVQFFTHFERVVNGKRYNESEAKYESRHKLPILKMKKALMLLQVGNIYTPKLFEEFQEEYEDYQGTCIKELKEGTYVVTNYNDDKERIVMGHLVDQRAACDCHKFETHGILCSHALKFLDVMNIKLLPQHYILKRWTRDARLGRNRDWKGQHIELDIKAHFMKRHNELCSRMVDLTNKASQSHQTYTFLSKVYEESNKIIDDMLAKNCTDEVSSGMCHGDQGFKKSSDNGTTEMERLYFFS. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00787 506 Pfam MULE transposase domain 172 233 IPR018289 -
Seca12g00787 506 ProSiteProfiles WRKY domain profile. 28 102 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00787 506 SMART 26again6 363 390 IPR006564 GO:0008270
Seca12g00787 506 Pfam FAR1 DNA-binding domain 13 103 IPR004330 -
Seca12g00787 506 ProSiteProfiles Zinc finger SWIM-type profile. 341 388 IPR007527 GO:0008270
Seca12g00787 506 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 463 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00787 Seca-Chr12 7267395 7269911 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g00787 FAR1 1.6e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00787 - - cill:122275932 398.667