Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00786 ATGAGGTATATTCGTACCAACAGCTTGAAGAGTCTCTTCTCCTTGAGAAGAAGAAGTTTAGGGGAACAAGTTCTGAGCCCCAACGGTTCTACTGGTGAAGAAAATGATTTGAGCTTGGAGATTCTTCCACATGCAGAAGCAGAACCTTCTCAGAGACCCACTTGGAAATGCTTCTCTTATGAAGAGTTGTTTGATGCCACCAATGGTTTCAGCTCAGAAAATATGGTTGGAAAAGGAGGCTATGCAGAGGTTTATAAGGGAACACTGAAAGATGGTGAGGAAATTGCTGTGAAGAGGCTAACAAGAACTTCAAGAGATGAGAGAAAGGAGAAAGAGTTTCTAACAGAGATTGGTACAATTGGTCATGTACGCCATTCCAATGTATTGCCTCTTCTGGGGTGTTGTATTGACAATGGTCTTTACCTTGTTTTTGAGTTATCCACCAGAGGTTCTGTTGCATCTCTTATTCATGATGAAAAATTGCCACCTTTAGATTGGAAAACAAGGCATAAAATAGCTCTTGGGACTGCACATGGCCTTCACTACTTGCACAAAGGCTGCAAGAGGAGGATAATCCACCGAGACATCAAGGCTTCAAATATTCTATTGACAAAAGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCTCAATGGACCCATCATTCTATTGCCCCAATAGAAGGAACATTTGGACATTTGGCCCCTGAGTACTATTTGCATGGAGTTGTTGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCATGCTAGAAGTCATCTCTGGGAGGAAACCAGTGGATGGGTCTCACCAAAGTTTACATAGCTGGGCTAAACCAATTTTGAACAAGGGTGAGATAGAACAGCTGGTAGATCCAAGGCTTGAAGGGGCTTATGATGTGACACAGTTAAAAAGGCTTGCTTTTGCTGCCTCCTTGTGCATCCGGGCATCTTCAACTTGGCGACCTACCATGAATGAGGTATTGGAGATAATGGAAGAGGGAGAAATGGATAAAGAGAAGTGGAAAATGCCAGAGGAAGAAGAAGAGCAAGAAGAGGAGTTCTGGGGTTTTGAGGATTTGGAATATGAATATGACAGTTCCTTTTCAATGTCTTTAATTGACTCTGTTGGAAGTAACTAA 1158 0.4188 MRYIRTNSLKSLFSLRRRSLGEQVLSPNGSTGEENDLSLEILPHAEAEPSQRPTWKCFSYEELFDATNGFSSENMVGKGGYAEVYKGTLKDGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSTRGSVASLIHDEKLPPLDWKTRHKIALGTAHGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFMLEVISGRKPVDGSHQSLHSWAKPILNKGEIEQLVDPRLEGAYDVTQLKRLAFAASLCIRASSTWRPTMNEVLEIMEEGEMDKEKWKMPEEEEEQEEEFWGFEDLEYEYDSSFSMSLIDSVGSN. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00786 385 CDD STKc_IRAK 76 339 - -
Seca12g00786 385 PANTHER OS08G0249100 PROTEIN 41 367 IPR046958 -
Seca12g00786 385 FunFam Putative receptor-like serine/threonine-protein kinase 148 362 - -
Seca12g00786 385 FunFam Putative receptor-like serine/threonine-protein kinase 40 146 - -
Seca12g00786 385 Pfam Protein tyrosine and serine/threonine kinase 73 333 IPR001245 GO:0004672|GO:0006468
Seca12g00786 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Seca12g00786 385 Gene3D Transferase(Phosphotransferase) domain 1 148 363 - -
Seca12g00786 385 SMART serkin_6 70 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00786 385 ProSiteProfiles Protein kinase domain profile. 70 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00786 385 SUPERFAMILY Protein kinase-like (PK-like) 50 337 IPR011009 -
Seca12g00786 385 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Seca12g00786 385 Gene3D Phosphorylase Kinase; domain 1 42 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00786 Seca-Chr12 7251843 7256438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00786 56 348 Receptor kinase-like Gene Family AT1G60800 43.854 6.46e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca12g00786 PK_Tyr_Ser-Thr 7.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00786 - - gmx:100305398 662.529