Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g00786 | ATGAGGTATATTCGTACCAACAGCTTGAAGAGTCTCTTCTCCTTGAGAAGAAGAAGTTTAGGGGAACAAGTTCTGAGCCCCAACGGTTCTACTGGTGAAGAAAATGATTTGAGCTTGGAGATTCTTCCACATGCAGAAGCAGAACCTTCTCAGAGACCCACTTGGAAATGCTTCTCTTATGAAGAGTTGTTTGATGCCACCAATGGTTTCAGCTCAGAAAATATGGTTGGAAAAGGAGGCTATGCAGAGGTTTATAAGGGAACACTGAAAGATGGTGAGGAAATTGCTGTGAAGAGGCTAACAAGAACTTCAAGAGATGAGAGAAAGGAGAAAGAGTTTCTAACAGAGATTGGTACAATTGGTCATGTACGCCATTCCAATGTATTGCCTCTTCTGGGGTGTTGTATTGACAATGGTCTTTACCTTGTTTTTGAGTTATCCACCAGAGGTTCTGTTGCATCTCTTATTCATGATGAAAAATTGCCACCTTTAGATTGGAAAACAAGGCATAAAATAGCTCTTGGGACTGCACATGGCCTTCACTACTTGCACAAAGGCTGCAAGAGGAGGATAATCCACCGAGACATCAAGGCTTCAAATATTCTATTGACAAAAGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCTCAATGGACCCATCATTCTATTGCCCCAATAGAAGGAACATTTGGACATTTGGCCCCTGAGTACTATTTGCATGGAGTTGTTGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCATGCTAGAAGTCATCTCTGGGAGGAAACCAGTGGATGGGTCTCACCAAAGTTTACATAGCTGGGCTAAACCAATTTTGAACAAGGGTGAGATAGAACAGCTGGTAGATCCAAGGCTTGAAGGGGCTTATGATGTGACACAGTTAAAAAGGCTTGCTTTTGCTGCCTCCTTGTGCATCCGGGCATCTTCAACTTGGCGACCTACCATGAATGAGGTATTGGAGATAATGGAAGAGGGAGAAATGGATAAAGAGAAGTGGAAAATGCCAGAGGAAGAAGAAGAGCAAGAAGAGGAGTTCTGGGGTTTTGAGGATTTGGAATATGAATATGACAGTTCCTTTTCAATGTCTTTAATTGACTCTGTTGGAAGTAACTAA | 1158 | 0.4188 | MRYIRTNSLKSLFSLRRRSLGEQVLSPNGSTGEENDLSLEILPHAEAEPSQRPTWKCFSYEELFDATNGFSSENMVGKGGYAEVYKGTLKDGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSTRGSVASLIHDEKLPPLDWKTRHKIALGTAHGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFMLEVISGRKPVDGSHQSLHSWAKPILNKGEIEQLVDPRLEGAYDVTQLKRLAFAASLCIRASSTWRPTMNEVLEIMEEGEMDKEKWKMPEEEEEQEEEFWGFEDLEYEYDSSFSMSLIDSVGSN. | 386 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g00786 | 385 | CDD | STKc_IRAK | 76 | 339 | - | - | |
Seca12g00786 | 385 | PANTHER | OS08G0249100 PROTEIN | 41 | 367 | IPR046958 | - | |
Seca12g00786 | 385 | FunFam | Putative receptor-like serine/threonine-protein kinase | 148 | 362 | - | - | |
Seca12g00786 | 385 | FunFam | Putative receptor-like serine/threonine-protein kinase | 40 | 146 | - | - | |
Seca12g00786 | 385 | Pfam | Protein tyrosine and serine/threonine kinase | 73 | 333 | IPR001245 | GO:0004672|GO:0006468 | |
Seca12g00786 | 385 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 191 | 203 | IPR008271 | GO:0004672|GO:0006468 | |
Seca12g00786 | 385 | Gene3D | Transferase(Phosphotransferase) domain 1 | 148 | 363 | - | - | |
Seca12g00786 | 385 | SMART | serkin_6 | 70 | 336 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g00786 | 385 | ProSiteProfiles | Protein kinase domain profile. | 70 | 342 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca12g00786 | 385 | SUPERFAMILY | Protein kinase-like (PK-like) | 50 | 337 | IPR011009 | - | |
Seca12g00786 | 385 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 98 | IPR017441 | GO:0005524 | |
Seca12g00786 | 385 | Gene3D | Phosphorylase Kinase; domain 1 | 42 | 146 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g00786 | Seca-Chr12 | 7251843 | 7256438 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g00786 | 56 | 348 | Receptor kinase-like Gene Family | AT1G60800 | 43.854 | 6.46e-72 | 233 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VI | Seca12g00786 | PK_Tyr_Ser-Thr | 7.6e-41 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g00786 | - | - | gmx:100305398 | 662.529 |