Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00785 ATGAAGCACTTCATGCTCCCAAGGAACCCAATCGTGAGGGACGCAAAGCTCCCTTGTTCGTCAAGCCCTAGCTCCGCCAAATCTAGACCCTCTCGCAAGCACAAATCATCCTCCAAAGAGAACGATCCACCCTCAGATCCCAATCAAAGTGCACTTTCACGCGGGGTTGATGTAGTGGTCGGAACACCTGGTAGAATAATTGATCTAATAAATGGAAACAGCCTTAAGCTGAGTGAAGTTCAGTATTTGGTCCTAGATGAAGCTGATCAGATGCTCGTAGTTGGGTTTGAGGAGGATGTGGAATTCATCTTTGGGGCGCTGGTTGTTAAAGCAGATGCAAAAGCTATTGATAAGGCTAGTGCAATAAGATCGAAACATTCTGTGACTGAGCAGCAAAGAAGGAGCAAGATAAATGAGAGGTATGGAGAAAGCTTCATGACACTTGTAATGATATTGTTGCTCTTACCAAGAGCCTTTCCAACATGTAGCTTGGATGAATTATGA 504 0.4464 MKHFMLPRNPIVRDAKLPCSSSPSSAKSRPSRKHKSSSKENDPPSDPNQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLVVGFEEDVEFIFGALVVKADAKAIDKASAIRSKHSVTEQQRRSKINERYGESFMTLVMILLLLPRAFPTCSLDEL. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00785 167 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 126 IPR014001 -
Seca12g00785 167 Pfam DEAD/DEAH box helicase 46 107 IPR011545 GO:0003676|GO:0005524
Seca12g00785 167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 108 IPR027417 -
Seca12g00785 167 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 47 107 - -
Seca12g00785 167 MobiDBLite consensus disorder prediction 1 54 - -
Seca12g00785 167 Gene3D - 26 149 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00785 Seca-Chr12 7246427 7249511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00785 48 107 Eukaryotic Initiation Factors Gene Family AT1G72730 48.333 2.42e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00785 - K16911 gmx:100789516 103.605