Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00782 ATGAATCTGTTAGCTAACTTGGAACTGGGAATTGGGGTTCTTGTGTTGATTGGTGTGGTGATAGTTTTGCTTTCACTTTTTCTAATTTTATGGGCTATATGCAGCCAAAGATGTTGCAATCAGGAACATAGCAGCACAGAGAGTTCAGTCTCACAATCTCCAACATTCAACATAGACAAATTTCTTAATGGCATGGAAAGAGAGAAGCTGATCAAATTTACCTATCAACAGTTAAGGACTGCTACTCACAACTTCTCTAAAATGTTGGGGTCAGGAGGCTTTGGAGCAGTGTATTTTGGAAGTTTAAGTACTGGAGTCAATGTAGCTGTCAAGGTCTTACATGGGAGTTCTGACAAGAGAGTTAAGCAGCAGTTCATGGCAGAGGTGAGTACAATTGGAAGAGTTCATCACTTGAATCTAGTTCATCTCTATGGATTTTGCTTTGAATGGGAATTGAGAGCACTTGTTTATGAGTATATGGTCAATGGTTCACTTGACAAGTATCTATTTCATGAAGACAGAACCTTAGGATTTGAGAAGCTTCATGAGATTGCTGTTGGAACTGCTGGAGGCCTTGCTTACTTGCATGAAGAGTGCTCACAAAGAATAGTCCACTATGACATAAAACCAGGGAATATCCTCTTAGATGAGAAATTTTCTCCCAAAGTTTCTGATTTTGGTTTGGCTAAGCTTTGCAATAGAGAAAACACACATATAACCATGACAGGAGGAAGAGGGACTCCAGGTTATGCTGCACCAGAGCTTTGGTTGCCATTTCCTGTGACTCATAAGTGTGATGTTTACAGTTTTGGAATGCTGTTATTTGAAATGATAGGTAGGAGAAGGAACCTTGACATTAGCCTTCAAGAAAGTCAAGAATGGTTTCCAAGGTGGGTTTGGGAAAAATTTGATTCAGGACAACTGGGAGAGTTAAGAATAGCTTGTGGGACAGAAGAGAAATATATGGAGATAGTAGAGAGAATGACTAAGGTGGCTTTATGGTGTGTTCAGTATAGATCAGAATTGAGACCTTCAATGAGTGCTGTTGTGGGAATGTTGGAAGGCCTAGTGGAAATTCCTAAACCTCTGAACCCTTTTCAGACTATGATGGTTGGGACTCTTTCTAACCAACCAAATCATTCATCAGATAGCACTGTTGGTTCGGGTTCTGAAGTGAACCAATCTACATTTTTAAATGCTTGTGATTCATGA 1212 0.3985 MNLLANLELGIGVLVLIGVVIVLLSLFLILWAICSQRCCNQEHSSTESSVSQSPTFNIDKFLNGMEREKLIKFTYQQLRTATHNFSKMLGSGGFGAVYFGSLSTGVNVAVKVLHGSSDKRVKQQFMAEVSTIGRVHHLNLVHLYGFCFEWELRALVYEYMVNGSLDKYLFHEDRTLGFEKLHEIAVGTAGGLAYLHEECSQRIVHYDIKPGNILLDEKFSPKVSDFGLAKLCNRENTHITMTGGRGTPGYAAPELWLPFPVTHKCDVYSFGMLLFEMIGRRRNLDISLQESQEWFPRWVWEKFDSGQLGELRIACGTEEKYMEIVERMTKVALWCVQYRSELRPSMSAVVGMLEGLVEIPKPLNPFQTMMVGTLSNQPNHSSDSTVGSGSEVNQSTFLNACDS. 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00782 403 SMART serkin_6 83 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00782 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Seca12g00782 403 FunFam Putative receptor-like protein kinase 160 361 - -
Seca12g00782 403 Gene3D Phosphorylase Kinase; domain 1 59 159 - -
Seca12g00782 403 ProSitePatterns Protein kinases ATP-binding region signature. 89 111 IPR017441 GO:0005524
Seca12g00782 403 Pfam Protein tyrosine and serine/threonine kinase 85 351 IPR001245 GO:0004672|GO:0006468
Seca12g00782 403 ProSiteProfiles Protein kinase domain profile. 83 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00782 403 Gene3D Transferase(Phosphotransferase) domain 1 160 362 - -
Seca12g00782 403 MobiDBLite consensus disorder prediction 372 391 - -
Seca12g00782 403 FunFam serine/threonine-protein kinase PBS1-like 57 159 - -
Seca12g00782 403 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 15 363 - -
Seca12g00782 403 SUPERFAMILY Protein kinase-like (PK-like) 67 354 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00782 Seca-Chr12 7225109 7226414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00782 70 386 Receptor kinase-like Gene Family AT5G38280 41.538 3.11e-77 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca12g00782 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00782 - - jre:109002952 522.316