Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00779 ATGGAGTGGGACAGCAATTCGGATCTGAGTGGGGACGGGGACGATGATGAAGGCTTCGATTGCTCTCTCCCTTTCCCCTTCTCCATCGACGTCGACAACCTTCTCCAAACGACGCCGTGTGGCTTCGTCGTCTCCGATGCGCTCGAGCCCGATCACCCTATCATTTACGTCAACACTGTCTTCGAGATGGTCACCGGCTACCGTGCCGAGGACGTTCTCGGTCGCAACTGGTTACATCGGCATCCGTACTCGTGTGCTTTGAGGAGGCTTAGCTCAATTATGAATGTGTTGAATGTGAAATGCCCTGTTTTTAACTATTTCGGTGATGCACAGTTTTTGTTGCTAGTTCGGAAAGATGAGAAGGGGAGTAGGATGAGGAAGTCAAATTCAATTGAGGGTGAAAGGGGATGCACCATGAAAATTAAGAAGTGTAGAAGGGGGAAGGGTTCAAGCATGAAAGGGTTGGGAATCCAAGGCTGTAAGCTCAGGCTGCTTTGTGTATTGAAAGCTTCTGAGTGGCTGATGCTTGAAATGGGTGTGCACTGTGCTACTGGATTTGACAGTGAAATTTAG 573 0.4921 MEWDSNSDLSGDGDDDEGFDCSLPFPFSIDVDNLLQTTPCGFVVSDALEPDHPIIYVNTVFEMVTGYRAEDVLGRNWLHRHPYSCALRRLSSIMNVLNVKCPVFNYFGDAQFLLLVRKDEKGSRMRKSNSIEGERGCTMKIKKCRRGKGSSMKGLGIQGCKLRLLCVLKASEWLMLEMGVHCATGFDSEI. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00779 190 CDD PAS 38 98 IPR000014 -
Seca12g00779 190 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 28 83 - -
Seca12g00779 190 Gene3D PAS domain 25 147 - -
Seca12g00779 190 ProSiteProfiles PAS repeat profile. 34 78 IPR000014 -
Seca12g00779 190 SUPERFAMILY PYP-like sensor domain (PAS domain) 33 92 IPR035965 -
Seca12g00779 190 Pfam PAS fold 30 78 IPR013767 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00779 Seca-Chr12 7209638 7211520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00779 28 76 AGC Kinase Gene Family AT3G45780 46.939 1.61e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00779 K12115 - rcu:8270706 105.531