Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00775 ATGGCGGCCAAAGGGTCAATAACCCTTGAGGAAATCAAGAACGAGACTGTTGATCTGGAACGTATTCCTGTTGAGGAAGTGTTCGAGCAATTGAAATGTACCAGAGAAGGGTTGTCCTCAGAGGAAGGAGCCAATCGGCTTCAAATATTCGGGCCAAACAAGCTAGAGGAGAAAAAGGAAAGCAAATTACTCAAGTTTCTCGGGTTCATGTGGAATCCTCTGTCATGGGTCATGGAAGCTGCAGCTATCATGGCAATTGCTCTTGCAAATGGTGATGGCAAGCCCCCAGATTGGCAAGATTTTGTTGGTATTGTTTGCTTGTTGCTCATCAACTCCACCATCAGTTTCATTGAAGAAAATAATGCTGGCAATGCTGCTGCTGCTCTCATGGCTGGTCTTGCTCCCAAGACAAAGGTTCTTAGGGATGGTCAATGGAGTGAGCAAGAAGCTGCAATTCTAGTCCCTGGAGACATCATAAGCATCAAACTAGGTGATATTATTCCTGCTGATGCTCGTCTTCTTGAGGGTGATCCTTTAAAGGTTGATCAATCTGCTTTGACTGGAGAGTCACTTCCAGTGAATAAGAATCCTGGGGATGAGGTTTTCTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCTGTTGTTATTGCAACTGGTGTCCACACATTTTTTGGGAAAGCAGCTCACCTGGTGGATAGTACCAACCAAGTTGGACATTTCCAGAAGGTGCTTACAGCAATTGGAAACTTCTGTATTTGTTCCATTGCAGTTGGTATGTTGGCTGAGATCATAGTCATGTACCCAATTCAGCACCGAAAGTACAGAGATGGAATTGACAACCTTTTGGTCCTCTTGATTGGAGGAATTCCCATTGCTATGCCTACTGTGTTGTCTGTGACAATGGCCATTGGTTCTCACAGGCTTTCTCAGCAAGGTGCTATCACCAAGCGAATGACTGCCATTGAAGAAATGGCTGGTATGGATGTTCTTTGCAGTGACAAGACGGGTACACTTACACTTAACAAGCTGACTGTTGACAAGAACTTGATTGAGGTCTTTGCAAAGGGTGTGGACAAGGAACATGTGTTGCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAACCAGGATGCTATAGATGCTGCTGTTGTTGGAACTCTTGCTGACCCAAAAGAGGCAAGGGCTGGGATAAGAGAAGTGCACTTCTTCCCATTCAATCCTGTCGATAAGAGAACTGCTTTGACTTACATTGATTCTGATGGAAATTGGCACCGTGCAAGCAAAGGTGCTCCTGAGCAGATCATGACCCTATGTAACCTCAGGGAAGATGCTAAAAAGAAGATCCATGCTATGATTGACAAGTTTGCAGAGAGAGGGCTTCGTTCACTTGCTGTTGCTAGACAGGAAGTTCCTGAGAAAACAAAAGAAAGCGCTGGTGGTCCATGGCAGTTTGTTGGTTTGTTGTCACTGTTTGACCCCCCAAGACATGACAGTGCTGAAACTATTCGTAGAGCACTTCATCTTGGTGTAAATGTCAAGATGATTACTGGTGATCAACTTGCCATAGCTAAGGAGACTGGCAGGAGGCTTGGGATGGGAACTAATATGTACCCATCTGCTACCTTGCTTGGTCAAGACAAAGATTCCAATATTGCTGCACTTCCAGTAGAAGAGCTGATTGAGAAGGCAGATGGATTTGCTGGAGTATTTCCAGAGCACAAATATGAAATTGTAAAGAAGTTGCAAGAGAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTCAACGATGCTCCTGCTTTGAAGAAGGCTGATATTGGAATTGCTGTTGCTGATGCTACTGATGCTGCAAGAGGTGCTTCTGATATTGTCTTGACAGAACCAGGATTGAGTGTTATTATTAGTGCAGTCTTAACTAGCAGAGCTATTTTCCAAAGAATGAAAAACTACACGATTTATGCTGTATCCATCACAATCCGTATAGTGTTTGGATTCATGTTCATTGCATTGATCTGGAAATTTGACTTCTCTCCTTTCATGGTTTTGATTATTGCCATTCTAAATGATGGAACAATCATGACAATTTCAAAAGATAGGGTGAAGCCATCTCCCCTGCCTGATAGCTGGAAACTGAAAGAAATATTTGCTACTGGGATTGTTCTTGGAAGTTACTTAGCACTGATGACTGTCATATTCTTCTGGGCAATGAAAGAAACTCATTTCTTCCCTGTAAGAATTTCTAACTATACTATACTCAAGTGCGACAAATTTGGAGTTAGACACTTGACTCACGATGAAATGATGTCTGCTTTATATCTACAAGTCAGTATAGTTAGCCAGGCTCTAATATTTGTAACCCGTTCCCGTAGCTGGTCCTTTATTGAACGCCCTGGAATGTTGTTAGTCTGTGCTTTCATTATTGCTCAACTGATTGCTACAGTCATAGCAGTATATGCTGATTGGGGATTCGCAAAGGTTAAAGGAATTGGTTGGGGTTGGGCAGGAGTCATCTGGCTCTACAGTGTTGTCTTCTATGTTCCACTTGATTTGATGAAGTTTGCCATCCGCTACATATTGAGTGGCAAGGCTTGGTTAAATCTGCTTGAGAACAAGACTGCCTTCACTACCAAGAAAGACTATGGTAAGGAGGAGAGGGAAGCTCAGTGGGCTCTTGCTCAAAGGACCCTGCATGGACTTCAACCACCAGAAACTTCAGGTATTTTCAATGAAAAGAGCAGTTACAGAGAACTCTCTGAGATTGCTGAGCAGGCCAAGAGAAGAGCTGAAGTTGCAAGGCTTCGTGAGCTTCACACACTTAAGGGACATGTTGAGTCAGTGGTGAAGTTGAAAGGTCTGGACATTGATACAATTCAGCAGCACTACACAGTGTGA 2892 0.435 MAAKGSITLEEIKNETVDLERIPVEEVFEQLKCTREGLSSEEGANRLQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGDGKPPDWQDFVGIVCLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGQWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVNKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDKEHVLLLAARASRTENQDAIDAAVVGTLADPKEARAGIREVHFFPFNPVDKRTALTYIDSDGNWHRASKGAPEQIMTLCNLREDAKKKIHAMIDKFAERGLRSLAVARQEVPEKTKESAGGPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSATLLGQDKDSNIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGSYLALMTVIFFWAMKETHFFPVRISNYTILKCDKFGVRHLTHDEMMSALYLQVSIVSQALIFVTRSRSWSFIERPGMLLVCAFIIAQLIATVIAVYADWGFAKVKGIGWGWAGVIWLYSVVFYVPLDLMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSGIFNEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV. 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00775 963 Gene3D - 97 827 - -
Seca12g00775 963 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00775 963 PRINTS H+-transporting ATPase (proton pump) signature 772 793 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00775 963 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00775 963 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00775 963 PRINTS H+-transporting ATPase (proton pump) signature 622 647 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00775 963 FunFam Plasma membrane ATPase 344 491 - -
Seca12g00775 963 Gene3D - 912 963 - -
Seca12g00775 963 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 859 IPR023298 -
Seca12g00775 963 Pfam E1-E2 ATPase 134 311 - -
Seca12g00775 963 Gene3D - 135 219 - -
Seca12g00775 963 FunFam Plasma membrane ATPase 135 219 - -
Seca12g00775 963 PRINTS P-type cation-transporting ATPase superfamily signature 486 497 - -
Seca12g00775 963 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Seca12g00775 963 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Seca12g00775 963 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Seca12g00775 963 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Seca12g00775 963 PRINTS P-type cation-transporting ATPase superfamily signature 508 518 - -
Seca12g00775 963 SUPERFAMILY HAD-like 328 638 IPR036412 -
Seca12g00775 963 NCBIfam HAD-IC family P-type ATPase 566 680 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00775 963 NCBIfam HAD-IC family P-type ATPase 104 351 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00775 963 SFLD p-type atpase 314 642 IPR044492 -
Seca12g00775 963 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
Seca12g00775 963 ProSitePatterns E1-E2 ATPases phosphorylation site. 334 340 IPR018303 -
Seca12g00775 963 Pfam Cation transporter/ATPase, N-terminus 22 84 IPR004014 -
Seca12g00775 963 CDD P-type_ATPase_H 37 853 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca12g00775 963 Coils Coil 914 934 - -
Seca12g00775 963 SFLD C1.7: P-type atpase like 314 642 - -
Seca12g00775 963 FunFam Plasma membrane ATPase 483 639 - -
Seca12g00775 963 PANTHER CALCIUM-TRANSPORTING ATPASE 20 895 - -
Seca12g00775 963 NCBIfam plasma-membrane proton-efflux P-type ATPase 37 818 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca12g00775 963 Pfam haloacid dehalogenase-like hydrolase 328 605 - -
Seca12g00775 963 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Seca12g00775 963 Gene3D - 344 491 IPR023299 GO:0000166
Seca12g00775 963 Gene3D - 329 628 IPR023214 -
Seca12g00775 963 FunFam ATPase 4 plasma membrane-type 577 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00775 Seca-Chr12 7136066 7143676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00775 8 963 Primary Pumps ATPases AT4G30190 83.148 0.0 1628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00775 K01535 - gmx:100816905 1751.49