Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00755 ATGTCTTCCCAGGAGAAGAGCAAAACGGGGAAAAAGCTGCAGAAGAGCTATTTCGATGTGTTGGGATTGTGCTGTTCTTCGGAGGTGCCACTGATTGAGAACATCCTGAAACCTCTTGAGGGAATTAAAGAGGTTTCAGTCATCGTTCCATCACGAACTGTCATCGTTGTCCATGATAGTCTTGTCATTTCACAACTTCAAATTGTTAAGGCACTGAACCAAGCAAGACTAGAAGCGAATATTAGAGTGTATGGAAACGAAAAGCAGCAAAAGAGATGGCCAAGCCCATATTCTGTTGCTTCTGGTTTGCTCCTTGCGCTTTCGTTTCTCAAGTATGTGTATCCTCCCTTGAAATATCTCGCACTTGGAGCAGTTGCTGCAGGCGTCTATCCCATTATCTTAAAGGCTTTTGTCTCCATTCGGAACGTTAGATTTGACATAAACATTCTCATGATCATAGCAGTCATTGGGACAATTGCTATGAACGATTATACGGAAGCTGGCTCCATTGTCTTCCTCTTCTCAATTGCAGAATGGCTGGAGACAAGGGCAAGCTACAAGGCAAATGCAGCAATGTCATCGTTGATGAACATAGCTCCTCAAAAAGCAGTCATAGCTGAGACAGGGGAAGTTGTGGACGCTGATGAGGTGAAAGTAAACACCATCCTAGCAGTTAAAGCAGGGGAGGTGATACCCATTGATGGAGTTGTTTTAGATGGAAACTGTGAAGTTGACGAGAAAACATTGACTGGGGAATCATTCCCAGTAGCCAAACAAAAGGATTCTGCTGTTTGGGCTGGCACCATCAATTTAAATGGTTATGTTAGTGTGAAAACTACCGCACTAGCTGAAGATTGTGTGGTGGCTAAAATGGCCAAGCTTGTGGAAGAAGCTCAAAACAGCAAAACCAGCACTCAGAGATTGATTGACAAGTTTGCCAAGTTTTATACCCCAGCTGTTGTAGTCATATCAACTCTTGTAGCGGTGATTCCAATTGTGTTAAAAGTACATAACGAGAAACACTGGCTTCACTTTGCACTGGTTATTTTGGTAAGTGCATGTCCATGTGCACTTATCCTTTCAACGCCAGTTGCAACTTTTTGTGCTTATACGAAAGCAGCTACATCAGGTCTTCTCATCAAAGGGGGTGATTATCTTGAAACACTTGCAAAAGTTAAGGTCATGGCTTTTGACAAAACGGGTACCATAACAAAGGGTGAATTTGTGGTGACAAATTTTCAATCTCTCTCAGATGACATTGATTTGAACACATTGGCTTACTGGGTATCAAGCATTGAGAGCAAGTCAAGCCATCCATTGGCAGCAGCAATTGTTGATTATGGAAGGTCTCTTTCCATTGAACCAAAACCAGAAAAGGTGACGGAGTTTGAAAATTTTCCTGGAGAAGGAATATGTGGAAAAATTGATGAGAGAGTTCTTTACATTGGAAACAAAAAAATTGCCACAAGAGCAGGGTCTGAAACAGTTCCCACCTTACAAGGTGATGCTCAGAGAGGAAAGACCACTGGGTACATATTCTCTGGAGCAACCCCAGTTGGAATATTCTCTCTAACTGATGCTTGTAGATCAGGGGTTCAGGAGGCAATAGGGCAGCTGAAGTTGTTGGGAATCAAAACCGCTATGCTCACTGGAGATTGTCAATCAGCTGCAATGCAAGCACAGGAGCAGCTTGGTCATGCTCTGGAGTTAGTCCATGCAGAACTTTTGCCAGAGGACAAGTCAAAAATCATCACAGAATTTAAAAAGGAAGGTCCAACAGCCATGATTGGAGATGGTTTAAATGACGCGCCTGCATTAGCTACAGCTGATATCGGAATCTCAATGGGAATTTCAGGTTCTGCACTGGCAAGTGAGACAGGCAACATAATTCTTATGTCAAATGACATTAGGAAGATACCAGAAGCCATTAAGCTTGCAAGAAAATCTCATAGGAAAGTGATAGAAAATATTATTTTGTCAGTCATTACTAAGGTTGCGATTCTTGGTTTGGCCATTGCTGGTCATCCAATTGTTTGGGCAGCAGTTGTTGCTGATGTTGGAACATGCTTGTTGGTCATCTTAAACAGCATGTTACTTCTGCGAAAAGGACACAAGCATGGAGGAAAATGTTGTAGATCTTCCACTCAACCACATATCCACAAAAATGGATGTGGTGGTACTAATGGCAGTTCCTCTCACCACCACCATCAGCAGCATCAGCATCAACATCAACATCAACATCATAGCCATAAACATTGTTGCTCAGACAATACAGAAAAGATATCTCAGCCTCAGAAGTGTGCCTCCCAGACATGTCTCTCAAAGTGTCCACCCTGCCCTTCAAATTCAAGTTTATGTGGAAGTGTTAACCATGTTAACATCATGGTGGATCATGATCAATGTAAGGGAAGTGATAAGTTCCATGAACCAGATCACTGTCATCACAGAAGATGTGACAAGAATCAAGAAAGAGTCCCGAAGCATGATATTGAAAACAAGGGCTGTTTAGATTCGCATGATTTGATTCTAAATGCAGAAGATAATGATGCAGTTGCAATAGACAGCCATGGTAATTGTTTGGGACATAAGTCCCACGGGGCAAAACATTGTCACAACCAAAATGTTGACAAGGTTACTCCTGACAGCACTTCACTTAGTTCATCTTGCCATCTCAATCTCCCTTGTCAAAAAGAAGGCCAACAGTTTGCTAAACACCGCCACATGATCCATGGTTGTGAAAATCACAAAGACCATGAATCCAGAAATATGTCAGGATCCAATCATGGCATTCAGCATAAAAAATCAGGTTGCCATTCTGATTTTAAGAAGTGTGGGACAGGTGAAATATCCATTGACATCATCAATGAGGATGTTGAATCAGCCTCGATGCATGGTTGTTTAAGTTTGGAAGAGAAAGGAAAAGATTCCTGTTGTAAAGGCAGCTCAGACACATGTGAGAAATTGCCAGTTGTGTTTGGCTGTGAAAGTTTAGATAAGAGAGAAATTAGTGCATGCTGCAGACATGACGGCTCTTCAAAAGAATCCATGGAATCCTCTATTATGCATGCTTGTGTTAGTTTGGACAAGAGAGAAGTTGGTGGATGTTGCAAGAGCTACATGAAGGAATGTTGTGGCAAGCATGGACACTCAGGAGCTGGTTTTGTTGGAGGTTTATCAGAAATTATCACAGAATAG 3195 0.4203 MSSQEKSKTGKKLQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVVHDSLVISQLQIVKALNQARLEANIRVYGNEKQQKRWPSPYSVASGLLLALSFLKYVYPPLKYLALGAVAAGVYPIILKAFVSIRNVRFDINILMIIAVIGTIAMNDYTEAGSIVFLFSIAEWLETRASYKANAAMSSLMNIAPQKAVIAETGEVVDADEVKVNTILAVKAGEVIPIDGVVLDGNCEVDEKTLTGESFPVAKQKDSAVWAGTINLNGYVSVKTTALAEDCVVAKMAKLVEEAQNSKTSTQRLIDKFAKFYTPAVVVISTLVAVIPIVLKVHNEKHWLHFALVILVSACPCALILSTPVATFCAYTKAATSGLLIKGGDYLETLAKVKVMAFDKTGTITKGEFVVTNFQSLSDDIDLNTLAYWVSSIESKSSHPLAAAIVDYGRSLSIEPKPEKVTEFENFPGEGICGKIDERVLYIGNKKIATRAGSETVPTLQGDAQRGKTTGYIFSGATPVGIFSLTDACRSGVQEAIGQLKLLGIKTAMLTGDCQSAAMQAQEQLGHALELVHAELLPEDKSKIITEFKKEGPTAMIGDGLNDAPALATADIGISMGISGSALASETGNIILMSNDIRKIPEAIKLARKSHRKVIENIILSVITKVAILGLAIAGHPIVWAAVVADVGTCLLVILNSMLLLRKGHKHGGKCCRSSTQPHIHKNGCGGTNGSSSHHHHQQHQHQHQHQHHSHKHCCSDNTEKISQPQKCASQTCLSKCPPCPSNSSLCGSVNHVNIMVDHDQCKGSDKFHEPDHCHHRRCDKNQERVPKHDIENKGCLDSHDLILNAEDNDAVAIDSHGNCLGHKSHGAKHCHNQNVDKVTPDSTSLSSSCHLNLPCQKEGQQFAKHRHMIHGCENHKDHESRNMSGSNHGIQHKKSGCHSDFKKCGTGEISIDIINEDVESASMHGCLSLEEKGKDSCCKGSSDTCEKLPVVFGCESLDKREISACCRHDGSSKESMESSIMHACVSLDKREVGGCCKSYMKECCGKHGHSGAGFVGGLSEIITE. 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00755 1064 ProSitePatterns Hypothetical cof family signature 2. 596 618 - -
Seca12g00755 1064 SUPERFAMILY Calcium ATPase, transduction domain A 210 295 IPR008250 -
Seca12g00755 1064 SFLD p-type atpase 379 648 IPR044492 -
Seca12g00755 1064 MobiDBLite consensus disorder prediction 734 750 - -
Seca12g00755 1064 SUPERFAMILY Calcium ATPase, transmembrane domain M 146 390 IPR023298 -
Seca12g00755 1064 MobiDBLite consensus disorder prediction 722 755 - -
Seca12g00755 1064 Pfam E1-E2 ATPase 206 374 - -
Seca12g00755 1064 FunFam Copper-transporting ATPase 1, putative 185 299 - -
Seca12g00755 1064 Gene3D - 407 528 IPR023299 GO:0000166
Seca12g00755 1064 Gene3D - 387 647 IPR023214 -
Seca12g00755 1064 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 8 702 - -
Seca12g00755 1064 SUPERFAMILY HMA, heavy metal-associated domain 11 80 IPR036163 GO:0046872
Seca12g00755 1064 NCBIfam HAD-IC family P-type ATPase 170 673 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00755 1064 Gene3D - 184 299 - -
Seca12g00755 1064 SUPERFAMILY HAD-like 395 697 IPR036412 -
Seca12g00755 1064 Gene3D - 10 83 - -
Seca12g00755 1064 PRINTS Copper-transporting ATPase signature 318 332 - -
Seca12g00755 1064 PRINTS Copper-transporting ATPase signature 187 205 - -
Seca12g00755 1064 PRINTS Copper-transporting ATPase signature 631 645 - -
Seca12g00755 1064 PRINTS Copper-transporting ATPase signature 574 591 - -
Seca12g00755 1064 CDD P-type_ATPase_HM 99 698 - -
Seca12g00755 1064 NCBIfam heavy metal translocating P-type ATPase 147 699 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca12g00755 1064 Pfam haloacid dehalogenase-like hydrolase 392 610 - -
Seca12g00755 1064 ProSitePatterns E1-E2 ATPases phosphorylation site. 398 404 IPR018303 -
Seca12g00755 1064 FunFam Putative cadmium/zinc-transporting ATPase 3 407 528 - -
Seca12g00755 1064 NCBIfam cadmium family heavy metal-translocating P-type ATPase 147 487 - -
Seca12g00755 1064 ProSiteProfiles Heavy-metal-associated domain profile. 14 80 IPR006121 GO:0046872
Seca12g00755 1064 SFLD C1.7: P-type atpase like 379 648 - -
Seca12g00755 1064 FunFam Putative cadmium/zinc-transporting ATPase 3 10 83 - -
Seca12g00755 1064 PRINTS P-type cation-transporting ATPase superfamily signature 542 552 - -
Seca12g00755 1064 PRINTS P-type cation-transporting ATPase superfamily signature 520 531 - -
Seca12g00755 1064 PRINTS P-type cation-transporting ATPase superfamily signature 596 615 - -
Seca12g00755 1064 PRINTS P-type cation-transporting ATPase superfamily signature 620 632 - -
Seca12g00755 1064 PRINTS P-type cation-transporting ATPase superfamily signature 396 410 - -
Seca12g00755 1064 PRINTS P-type cation-transporting ATPase superfamily signature 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00755 Seca-Chr12 6939619 6949120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00755 11 719 Primary Pumps ATPases AT4G30110 70.282 0.0 1057
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00755 K01534 - gmx:100817567 1646.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00755 12 6939619 6949120 Seca12g00755 12 6939619 6949120 ECH