Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00746 ATGCGGGATAGTGAGAAGAAGTTAAAGAATGGAAGATCTAAAAAATCCAGTCATTTGGAGGCACGCACAAAGTGCCAAGGGAAGAAGCACAAACTGGAATCAAAATCTCAAACACACAGTGTTGGGAATAATATATCAAGAAAGAGAGTTACTGACTCTTCCCACAAGGGGCCACACAAGGATTCTTCAAATAAGAAATTCATTATTCGACAGAAATTACATAAAACTGGCAGAAAATCTTCACAGAAGCCATCCTCAAAGCTACAAGACAAGAAAGTTTCTCTTAGTTCTAGAACAGAGGGAAAAGATGCTGAGGGAGAGGTGAAACATCAAAAAATAAGGAGAAAGAGAAAGAAGAAGAGGAAAAGGAATAATGTAGACCTTGATGAAGCTTCACGCCTGCAAAGGAGAACAAGGTACCTTTTAATCAAGTTGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCACGAAAGCAGATTTTAAAATGTAAACTTGGTATTCGTGATGCTATTCGCCAGTTGGATTCTCTTAGTTCCCTGAGTAGCATTGAAGATTCTGCCATGGCTTCAGATGGATCTGTTCACCATGAACATATATTCTGTGCAAAGTGCAAGCTGCGTGAAGCTCTTCCAGATAATGACATTATACTCTGTCATGGTACATGTAATCGTGCTTTTCACCAAAAATGTCATGATCCTCCTCTAGACACTGAAAATATTCCTCCAGGAGAGCAGGGCTGGCTTTGTAAATTTTGTGAGTGTAAGATGAAAATACTGGAGGCAATGAATGCCCATCTTGGAACTCGCTTCTCCTTTAACAGTAATTGGCAGGATGTATTCAAAGAAGAAGCTGCTCTACCTGATGGTGATACTGCATTACTGAATCCTGAAGAAGAATGGCCATCCGATGATTCTGAAGATGATGATTATAATCCAGAAAGGAGAGAGGATGGTCACGATATCAACACAGAAGGAACTGATGGTTTAAGCTGTTCCACCAGTCTGTGTTCTTCTGATGGTGAATGTTCTCTGGTAGATGATGGTGTGAGTCATGAATATTTTTCTGTCAATAGCAGCATAGATTCTGATGAGTCTGAGGAAAAAGCTTGTGGCCCTAGACAGCGAAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGTTCCTGCATGTGAGCAAGTGAGTGAAGATGAAGACTGGGGTCCTAGCAAAAGAAAGAGAAGAGAAAAGGAGTCTGATGCTGTTGATACTCTTATGACGTTGCATGAAAGTGAGAATAAGCATCCCAATAATGAGCACAACAACATGACAAGAAGGGATTCTTCAGACATAAATGTCAGAAGGCATTGTTTTAGGATTCCGCGCGATGCGGTTGAGAAGCTTCGCCATGTTTTTGCCGAGAACGAACTTCCTCCAAGATCTGTTAAGGAGGGTCTTTCAAAAGAGTTGGGACTTGATACTGAGAAGGTGTCCAACTGTCTCTTTTCTATCTTCATCTGGATTTACCTATGA 1587 0.4083 MRDSEKKLKNGRSKKSSHLEARTKCQGKKHKLESKSQTHSVGNNISRKRVTDSSHKGPHKDSSNKKFIIRQKLHKTGRKSSQKPSSKLQDKKVSLSSRTEGKDAEGEVKHQKIRRKRKKKRKRNNVDLDEASRLQRRTRYLLIKLKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCKLGIRDAIRQLDSLSSLSSIEDSAMASDGSVHHEHIFCAKCKLREALPDNDIILCHGTCNRAFHQKCHDPPLDTENIPPGEQGWLCKFCECKMKILEAMNAHLGTRFSFNSNWQDVFKEEAALPDGDTALLNPEEEWPSDDSEDDDYNPERREDGHDINTEGTDGLSCSTSLCSSDGECSLVDDGVSHEYFSVNSSIDSDESEEKACGPRQRKAVDYKKLYDEMFGKDVPACEQVSEDEDWGPSKRKRREKESDAVDTLMTLHESENKHPNNEHNNMTRRDSSDINVRRHCFRIPRDAVEKLRHVFAENELPPRSVKEGLSKELGLDTEKVSNCLFSIFIWIYL. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00746 528 ProSitePatterns Zinc finger PHD-type signature. 222 273 IPR019786 -
Seca12g00746 528 ProSiteProfiles Zinc finger PHD-type profile. 219 276 IPR019787 -
Seca12g00746 528 MobiDBLite consensus disorder prediction 49 68 - -
Seca12g00746 528 CDD PHD_PRHA_like 221 273 IPR045876 -
Seca12g00746 528 MobiDBLite consensus disorder prediction 1 130 - -
Seca12g00746 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 270 IPR013083 -
Seca12g00746 528 MobiDBLite consensus disorder prediction 417 439 - -
Seca12g00746 528 FunFam pathogenesis-related homeodomain protein-like 213 273 - -
Seca12g00746 528 SMART PHD_3 221 274 IPR001965 -
Seca12g00746 528 Pfam PHD-finger 221 276 IPR019787 -
Seca12g00746 528 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 25 517 - -
Seca12g00746 528 MobiDBLite consensus disorder prediction 308 351 - -
Seca12g00746 528 MobiDBLite consensus disorder prediction 1 36 - -
Seca12g00746 528 MobiDBLite consensus disorder prediction 318 332 - -
Seca12g00746 528 MobiDBLite consensus disorder prediction 93 110 - -
Seca12g00746 528 SUPERFAMILY FYVE/PHD zinc finger 212 279 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00746 Seca-Chr12 6816899 6820136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00746 120 516 Homeobox Transcription Factor Family AT4G29940 57.702 3.04e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca12g00746 PHD 3.2e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00746 - - gmx:100817639 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00746 12 6816899 6820136 Seca12g00746 12 6816899 6820136 ECH