Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00743 ATGTTTTTAGAAATGTCTTCGTGTTTGAGTGGAACAGGAGGAAGAACGTATGGATTTGATTTAGATTTTGTTAAATCTCCATCTTCATGGAGTCGAACTTCACAGACATCTTCTTCTCCTTCCTCAACCATCTCTGAATCCAGCAATTCACAATTGGCAATCTCCACCAGAAAACCCAGAACCCCGAGAAAGCGACCTAACCAAACCTACAACGAAGCTGCCGCACTCCTTTCCACAGCATACCCGAACCTGTTCTCTACAAAGAACCTCAAAACACCACCGGCTAATAAATTCACCAAACCAGAGGCATCGGAAACGTACGAGTCTTCTTCGGAATTGCTCTTACCTTTCAGGGTGTTGGACACCTCATCCTCGTTCTTAATCCAAAGCCCAATCCAACTCAAGCCCAGTTTTGAGCCCAAAGCGGTGAACCTGCAAGATTATAAGCCATGCCAGAGCCCAGGGGAGATAAGCTCCAGAGTGAATTCGCTTGAATTGGACGATGATTGCAGGGAAGATTTCGACGCCGAATCGATTCTCGATGAGGAAATTGAGGAAGGGATCGATAGCATCATGGGGAGTAGGGTTGAGGAGGATTCCAATGGCGCATCTAGTCACCATCCATGGATTGATTTTGGCGGGAAATTCGATTTCCGGCTTGGGTTGCAGAGAGCAGGGGTCAGGGCTCTTCGCCACGTGGATGACGGCAATTGGTGGAATTTTCCGGCAGTTGATATCCTTCAAATCTCGCCCAAAATCTACGGCGGCGGTAGCAAGCCTCCGCCGGAGAAGAAAAAGAAGAAGAAGGTGGTGGCGGTGGTGGAGAAACCGAAAGTGGAGTTGAACGAAGCGGAATTGCCCAAACCGAACCCTGGTTTGATGTTGAAATTGAATTTCGACGATATTCGGAATGCTTGGTCTGACCGGGGCTCGCCGTTCGCCGACGATAGCCCCGCCTCCGACGTACCGGGAAGTGACGTCACTGCGCGGCTGTCGCAAATTGATTTGTTATGGGACAATGGAGGAGTGAGGGAAGCTAGCGTGCTGCGCTACAAAGAAAAGCGGCGTACACGCCTCTTCTCTAAGAAGATCAGATACCAGGTCAGGAAAGTCAACGCAGATCGACGGCCCAGAATGAAGGTATGA 1146 0.4956 MFLEMSSCLSGTGGRTYGFDLDFVKSPSSWSRTSQTSSSPSSTISESSNSQLAISTRKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTPPANKFTKPEASETYESSSELLLPFRVLDTSSSFLIQSPIQLKPSFEPKAVNLQDYKPCQSPGEISSRVNSLELDDDCREDFDAESILDEEIEEGIDSIMGSRVEEDSNGASSHHPWIDFGGKFDFRLGLQRAGVRALRHVDDGNWWNFPAVDILQISPKIYGGGSKPPPEKKKKKKVVAVVEKPKVELNEAELPKPNPGLMLKLNFDDIRNAWSDRGSPFADDSPASDVPGSDVTARLSQIDLLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKV. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00743 381 ProSiteProfiles CCT domain profile. 344 381 IPR010402 GO:0005515
Seca12g00743 381 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 380 - -
Seca12g00743 381 MobiDBLite consensus disorder prediction 29 67 - -
Seca12g00743 381 MobiDBLite consensus disorder prediction 29 57 - -
Seca12g00743 381 Pfam CCT motif 344 380 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00743 Seca-Chr12 6805170 6808566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00743 293 380 C2C2-CO-like Transcription Factor Family AT1G25440 41.905 9.94e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca12g00743 CCT 2.6e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00743 - - aprc:113845796 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00743 12 6805170 6808566 Seca12g00743 12 6805170 6808566 ECH
Seca12g00743 12 6805170 6808566 Seca6g03814 6 105634168 105634983 PCT