Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00738 ATGGACAATATTGGTGACGAGTACAAGCATTATTGGGAGACCAACATGTTCTACCAAACACAAGACTTTGACAGCAACTGGGGATTAGATCTAGATGAGGCGTTCTCCGGATACTATGATTCGAGTTCCCCTGACGGTGGCGCTAATTCGTCTGTGGCATCGACGACTAAGAACATTGCCGCTGAGAGGAATAGAAGGAAGAAGCTGAACGAAAGGCTTTTTGCACTTAGAGCAGTGGTTCCCAATATTAGCAAGATGGATAAGGCTTCTATCATCAAGGATGCTATTGACTACATCAACCACTTGCATGACCAGGAGAAGACAATCCAAGCTCAGATCATCGATCTTCAATCTGCACCACCTAACCACGACCTTCCTATTTTGCTCAGGTCCAACAACAAGAGAGAACAACAACTTCATAATTCTTCAACAAATTATTCCCCAATTGAAATTATCGAGCTGAGGGTTACATACATGGGAGAGAAAACGTTTGTGGTGAGCTTGACATGCTGTAAGAAGACAGACACAATGGTAAAACTGTTTGAGGTGTTCGAATCTTTGAAGCTCAAGATCATCACAGCCAATATCACTTCTTTTTCAGGAACGCTTTTCAAAACAGTCTTCATCGAGGCAGAGGAGGAAGAGAAAGATCTTTTGCAGATAAAAATCCAGAGTGCCATTTCGGCTCTTAATGGTCCTCAAAGCCCAATGAGCATCTGA 720 0.4292 MDNIGDEYKHYWETNMFYQTQDFDSNWGLDLDEAFSGYYDSSSPDGGANSSVASTTKNIAAERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIDYINHLHDQEKTIQAQIIDLQSAPPNHDLPILLRSNNKREQQLHNSSTNYSPIEIIELRVTYMGEKTFVVSLTCCKKTDTMVKLFEVFESLKLKIITANITSFSGTLFKTVFIEAEEEEKDLLQIKIQSAISALNGPQSPMSI. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00738 239 Gene3D - 49 119 IPR036638 GO:0046983
Seca12g00738 239 MobiDBLite consensus disorder prediction 42 59 - -
Seca12g00738 239 SMART finulus 59 108 IPR011598 GO:0046983
Seca12g00738 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Seca12g00738 239 MobiDBLite consensus disorder prediction 40 59 - -
Seca12g00738 239 Pfam Helix-loop-helix DNA-binding domain 57 103 IPR011598 GO:0046983
Seca12g00738 239 Coils Coil 209 229 - -
Seca12g00738 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 118 IPR036638 GO:0046983
Seca12g00738 239 Coils Coil 52 72 - -
Seca12g00738 239 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 42 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00738 Seca-Chr12 6775007 6779205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00738 1 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 56.164 3.94e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g00738 HLH 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00738 - - gmx:100817978 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00738 12 6775007 6779205 Seca12g00738 12 6775007 6779205 ECH
Seca12g00738 12 6775007 6779205 Seca6g03811 6 105581944 105588318 PCT