Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca12g00725 | ATGAATTTGTCCAATGGTCGTTCTTCTCCTTGCGGCCAGACGCAGCGTGATTTAGAGGCTGGGTCTCCCAGTAGCAGCTCCCCTGATTTTGATGGCGGAGAAGACAATTCCGATCCATTTGATATTACCAGAACAAAAAATGCTTCCATTCAAAGACTCAAGCGTTGGAGGCAAGCTGCGCTTGTGCTTAACGCTTCTCGTCGATTTCGTTACACCTTGGATTTGAAGAAAGAAGAAGAGAGGAAGCAAATATTGAAATTGGTTACAGTGCATGCACGAGTTATTCAAGCAGCATATCGTTTCAAGGAAGCTGAGAAAGTGAATGGAACCATAGTACCACCTTCAAGCTCCAGTGGAGAATTTTCAATTGGACAAGAGAAGCTTTCTTCAATCTCAAGGGAGCATGATACTACTGCTCTGCGGGAATATGGAGGGGTTGTAGGGTTGTCACATTTGTTGAAAACCAATTTAGAGAAGGGGATTCAAGGTGATGATGCTGACTTGGTTAAACGAAGGAATACATTTGGTTCCAACAACTACCCTCGAAAGAAAGGAAGAAGTATTTTGATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCCGCCATAGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAGCATAAAAGAAACATACATTTGGAGGTCATTAGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCCCTAAATATTGGTAACCAGGTCCCTGCTGATGGAATTTTAATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTTGATAAGCATTCTAAGGAACCTTTTCTGATGTCTGGATGTAAAGTTGCAGGTGGAAGTGGTACTATGCTGGTAACTGCTGTCGGGATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTGTTGCCACCTTCATTGGTATTGCTGGACTCTCTGTGGCTGCCATTGTTCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATACTAAAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAGACCAGGGTTGGTGATGCTATTGATGGAGCAATTAAAATAGTCACTGTTGCGGTTACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTCCCTTTAGCAGTTACCTTAACTCTTGCCTATTCAATGAAAAAAATGATGGAAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCGGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGAAGATTGTTCCACCTGACAAAAAGTCACAGCTCTCTCCAATGCTCTGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTATGTACGTGAGAGTGGTAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACAGTGGGGAATTCAGATAAAATTTCAGCTTGGGATGGATTTTGAGGCTGCTAGATCAGAATCATCAATTATTCATGTCTTTCCATTTAATTCAGACAAAAAACGAGGCGGAGTTGCAATACAGACGACTGACTCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTTGCCTGCTGTACTGGGTATATTGATACAAATGATCAGTTGGTGGAAATGGATGAAGAGAAGATGACAGTTTTTAAAAAAGTTATTGAAGATATGGCTGCTGATAGTCTACGTTGTGTTGCCATTGCATATAGATTATATGAAATGGAGAATGTTCCAACTAGTGAAGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTCATTTTACTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCAGCTTTGCCAAAAAGCTGGGGTTAAGGTCAGAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTAGTTCATCTGATGATGCTACAGAGCCAAGCATTATTGAAGGAAAAACATTCCGTGCCTTGACAGATGAAGAGAGAGAAGAAATTGTTGAAAGGATATCGGTTATGGGAAGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCAGCACTACATGAGGCCGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGACATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCTCTTGTTATAAATGTTGTTGCTGCATTTTCCTCTGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTTATGGATCAGCTTCCAGTGGGTCGAAGAGAACCTCTTGTAACAAATGTTATGTGGAGGAATCTGCTGATACAGGCAATGTACCAAGTGTCCGTCTTGCTTATACTCAATTTCCGAGGCAGGAGCATACTGAGTCTGAGGCACGAGGCCAACGCAGTCAAAGTGAAGAACACTCTGATATTCAATGCATTTGTTCTTTGTCAAGTTTTTAATGAATTTAATGCACGAAAGCCAGACGAGTTCAACATATTCAAGGGGGTTACCAGAAACTACCTCTTCATGGGGATAGTGGGATTAACTATTGTGCTTCAGATTGTCATCATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTTAATTGGAAGCAGTGGCTCATCTCTGTCATTATAGGATTTATCAGCTGGCCTCTTGCTGTGGTCGGAAAACTGATACCAGTACCAGCGACTCCCATGAATAACTTCTTTCGAATATTTCGTTGTGGAAGAACTTAA | 3234 | 0.4187 | MNLSNGRSSPCGQTQRDLEAGSPSSSSPDFDGGEDNSDPFDITRTKNASIQRLKRWRQAALVLNASRRFRYTLDLKKEEERKQILKLVTVHARVIQAAYRFKEAEKVNGTIVPPSSSSGEFSIGQEKLSSISREHDTTALREYGGVVGLSHLLKTNLEKGIQGDDADLVKRRNTFGSNNYPRKKGRSILMFIWDACKDLTLIILMVAAIASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVDKHSKEPFLMSGCKVAGGSGTMLVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIAGLSVAAIVLIVLLARYFSGHTKNPDGSVQFIAGKTRVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMEDKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKKIVPPDKKSQLSPMLCSLLIEGVAQNTNGSVYVRESGNGVEVSGSPTEKAILQWGIQIKFQLGMDFEAARSESSIIHVFPFNSDKKRGGVAIQTTDSEIHIHWKGAAEIVLACCTGYIDTNDQLVEMDEEKMTVFKKVIEDMAADSLRCVAIAYRLYEMENVPTSEEELAHWSLPEDDLILLAIVGLKDPCRPGVKDAVQLCQKAGVKVRMVTGDNVKTAKAIAVECGILSSSDDATEPSIIEGKTFRALTDEEREEIVERISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALVINVVAAFSSGDIPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDQLPVGRREPLVTNVMWRNLLIQAMYQVSVLLILNFRGRSILSLRHEANAVKVKNTLIFNAFVLCQVFNEFNARKPDEFNIFKGVTRNYLFMGIVGLTIVLQIVIIEFLGKFTKTVKLNWKQWLISVIIGFISWPLAVVGKLIPVPATPMNNFFRIFRCGRT. | 1078 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca12g00725 | 1077 | CDD | P-type_ATPase_Ca_PMCA-like | 170 | 931 | - | - | |
| Seca12g00725 | 1077 | Gene3D | - | 167 | 362 | - | - | |
| Seca12g00725 | 1077 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 493 | 695 | IPR023299 | GO:0000166 | |
| Seca12g00725 | 1077 | FunFam | Calcium-transporting ATPase | 691 | 843 | - | - | |
| Seca12g00725 | 1077 | PRINTS | Sodium/potassium-transporting ATPase signature | 870 | 891 | - | - | |
| Seca12g00725 | 1077 | PRINTS | Sodium/potassium-transporting ATPase signature | 229 | 249 | - | - | |
| Seca12g00725 | 1077 | PRINTS | Sodium/potassium-transporting ATPase signature | 609 | 627 | - | - | |
| Seca12g00725 | 1077 | PRINTS | Sodium/potassium-transporting ATPase signature | 479 | 500 | - | - | |
| Seca12g00725 | 1077 | Gene3D | - | 194 | 1049 | - | - | |
| Seca12g00725 | 1077 | Gene3D | - | 48 | 104 | - | - | |
| Seca12g00725 | 1077 | FunFam | Calcium-transporting ATPase | 241 | 362 | - | - | |
| Seca12g00725 | 1077 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 488 | 494 | IPR018303 | - | |
| Seca12g00725 | 1077 | FunFam | Calcium-transporting ATPase | 815 | 1062 | - | - | |
| Seca12g00725 | 1077 | SFLD | p-type atpase | 468 | 850 | IPR044492 | - | |
| Seca12g00725 | 1077 | PANTHER | CATION TRANSPORTING ATPASE | 113 | 1060 | - | - | |
| Seca12g00725 | 1077 | FunFam | Calcium-transporting ATPase | 194 | 251 | - | - | |
| Seca12g00725 | 1077 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 145 | 1060 | IPR023298 | - | |
| Seca12g00725 | 1077 | SUPERFAMILY | Calcium ATPase, transduction domain A | 264 | 359 | IPR008250 | - | |
| Seca12g00725 | 1077 | SMART | Cation_ATPase_N_a_2 | 142 | 216 | IPR004014 | - | |
| Seca12g00725 | 1077 | SUPERFAMILY | HAD-like | 484 | 903 | IPR036412 | - | |
| Seca12g00725 | 1077 | FunFam | Calcium-transporting ATPase | 496 | 698 | - | - | |
| Seca12g00725 | 1077 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Seca12g00725 | 1077 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 134 | 1060 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Seca12g00725 | 1077 | Pfam | Cation transporter/ATPase, N-terminus | 145 | 211 | IPR004014 | - | |
| Seca12g00725 | 1077 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Seca12g00725 | 1077 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 38 | 80 | IPR024750 | GO:0005516 | |
| Seca12g00725 | 1077 | Pfam | E1-E2 ATPase | 264 | 464 | - | - | |
| Seca12g00725 | 1077 | Pfam | Cation transporting ATPase, C-terminus | 883 | 1058 | IPR006068 | - | |
| Seca12g00725 | 1077 | Gene3D | - | 496 | 698 | IPR023299 | GO:0000166 | |
| Seca12g00725 | 1077 | NCBIfam | HAD-IC family P-type ATPase | 231 | 400 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Seca12g00725 | 1077 | NCBIfam | HAD-IC family P-type ATPase | 427 | 516 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Seca12g00725 | 1077 | NCBIfam | HAD-IC family P-type ATPase | 764 | 878 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Seca12g00725 | 1077 | Pfam | haloacid dehalogenase-like hydrolase | 483 | 812 | - | - | |
| Seca12g00725 | 1077 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 340 | 510 | - | - | |
| Seca12g00725 | 1077 | FunFam | Calcium-transporting ATPase | 48 | 104 | - | - | |
| Seca12g00725 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 798 | 817 | - | - | |
| Seca12g00725 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 310 | 324 | - | - | |
| Seca12g00725 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 713 | 723 | - | - | |
| Seca12g00725 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 691 | 702 | - | - | |
| Seca12g00725 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 822 | 834 | - | - | |
| Seca12g00725 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 486 | 500 | - | - | |
| Seca12g00725 | 1077 | SFLD | Haloacid Dehalogenase | 468 | 850 | - | - | |
| Seca12g00725 | 1077 | Gene3D | - | 483 | 843 | IPR023214 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca12g00725 | Seca-Chr12 | 6639436 | 6654751 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca12g00725 | 8 | 1076 | Primary Pumps ATPases | AT4G29900 | 71.455 | 0.0 | 1557 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca12g00725 | K01537 | - | gmx:100790157 | 1764.59 |