Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00718 ATGCTAGTAGATCCAGTTAGGGTTCCCATGATGAGGATGGAAGAACAAATAGCTATACAAGAAGCTGCTTCGGCTGGGTTGAAAAGCATGGAGCATCTCATTCGTGTTCTGTCTTCTCAAGCCCCTTCTTCCTCCAATCAACGCCACCGCCTCGATCTCAACAACCTTGACTGCACCGAAATCACCGACTTCACCGTCTCCAAGTTCAAGCAAGTCATCAACTTGTTGAATCGTACCGGTCACGCTCGCTTTCGTCGTGCACCTTCTTCCTCTGCTCCTTCACAACCTCAATCTGAAAAATTGAACCACCAACCTCACTCAATGACTCTTGATTTTGCAAAACCGCTTCCGGTCAAATCAAATCCCAATCCTAACCAATCCACCACCGATTTATCCGTTTATCAATACTCTAAGTCCAAGGACACATACAGCATCTCCAACACCACCTCCTCTTTCATGTCCTCCATCACCGGCGACGGCAGCGTCTCCGACGGCAAGATTGGCCCTGCAATCCTCGCCGCCGGCAAGCCCCCTCTCTCCTCATCGCACAAGAAAAGGTGTCACGACGCTACCCTCTCCGGCAAAGTCTCATCCTCTGGCCAGTGCCATTGCTCCAAGAGAAGGAAATCCCGTGTGAAACGAATGATCCGTGTGCCGGCGATAAGCTCGAAGATTGCTGATATACCAGCAGATGAGTATTCATGGAGGAAGTACGGTCAGAAACCCATCAAGGGGTCACCTTACCCACGGTATTATTCTATTTCTAATCTCAAAGTCAAACATCAATTACTATGCCTTTAA 801 0.4881 MLVDPVRVPMMRMEEQIAIQEAASAGLKSMEHLIRVLSSQAPSSSNQRHRLDLNNLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSSSAPSQPQSEKLNHQPHSMTLDFAKPLPVKSNPNPNQSTTDLSVYQYSKSKDTYSISNTTSSFMSSITGDGSVSDGKIGPAILAAGKPPLSSSHKKRCHDATLSGKVSSSGQCHCSKRRKSRVKRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRYYSISNLKVKHQLLCL. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00718 266 ProSiteProfiles WRKY domain profile. 224 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00718 266 Pfam Plant zinc cluster domain 184 227 IPR018872 -
Seca12g00718 266 SMART WRKY_cls 229 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00718 266 Pfam WRKY DNA -binding domain 231 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00718 266 Gene3D WRKY domain 208 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00718 266 SUPERFAMILY WRKY DNA-binding domain 227 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00718 266 MobiDBLite consensus disorder prediction 88 103 - -
Seca12g00718 266 MobiDBLite consensus disorder prediction 84 103 - -
Seca12g00718 266 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 252 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00718 Seca-Chr12 6570031 6571497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00718 1 250 WRKY Transcription Factor Family AT4G31550 52.265 6.40e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g00718 Plant_zn_clust 5.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00718 - - gmx:732587 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00718 12 6570031 6571497 Seca12g00718 12 6570031 6571497 ECH
Seca12g02385 12 34328766 34330837 Seca12g00718 12 6570031 6571497 PCT
Seca12g00718 12 6570031 6571497 Seca6g03789 6 105253674 105255074 PCT