Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00714 ATGGGGAACTGTTGGAGTTTACAATCAAGTTCTCCAGGCGACCGTCCAAATTCCAATAACAATCAATCAGGGAGCATTCAGTTTTCTTTTGGTGTCAGCAAGAGGAGATTAATACAGAGTGACAATTCTACTTCTCTTGGGCGTAGCAGCCACTCTGGAGGAACCAGCAGACTCTTCAGTAAGAACTACTCAACTCGCAATAATACAAGTACATCCTTTTGGGGCTCTGACAATAGCCAAGCCTCTAGAGTAAGAGATGAAGAGGGGTTTCCTGATGGTCAGATCTTGGATGCTGCAAACTTGAAAGTTTTTACTTTGGCAGAACTAAAGGGAGCCACTAGAAATTTCAGAGCTGACACTGTTTTAGGAGAAGGGGGCTTTGGTACAGTATACAAAGGTTCAATTAAGGATAGAGAAGCATCAAAAAGAGGTGAAGAATTGACTATTGCCATCAAGAAATTGAATTCTGAAAGCAAGCAAGGAATTGCGGAATGGCTGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTTGTAAAGCTGTTGGGATTTGGGCGAGAGGATACTGAGCTATTCCTGGTGTATGAATTTATGCAGAGGGGCAGCTTGGATAACCACCTATTTGGAAGAGGTTCAAATGTTCGACCACTTTCATGGGACACAAGACTAAAGGTTATGATTGGAGCAGCTAGGGGACTAAATTTCCTCCATTCCTTGGAGAAGAAAATTATATACAGAGATTTTAAGCCCTCAAATATACTACTTGACAAGGCATATACAGTCAAGTTATCGGACTTTGGCTTAGCCAAATCTATTCAAGGTGATCAGACTCACGTGTCAACACAGATTGTGGGAACATATGGCTATGCTGCTCCTGAGTACATTGCCACAGGTCATTTGTATGTGAAAAGTGATGTGTATGGATTTGGGATTGTTTTGGTGGAGATGTTGACTGGGAAGAGGATAGGTGATATAATGCGCCTTTGTCAGCAAAAGTCCTTACAGGATTGGCTGAAATCAAATCTATTAAACAGAGGGAAAATAAGAACCAATATGGATGCAAGGTTGGAAGGCAAGTATCCATCCAACTTAGCATTACAAGTAGCTCAGCTGACACTAAAATGCATCCAAACAGACCCCAAAATAAGGCCATCAATGAAAGAAGTTGTTGAAACATTGGAACAGATTGAAGCAGCAAATGAGAAACCAGCTGATAACAGAAAGCGGCCTACTAATTCCCGGGTAGTTCAACTACATGGCCAGCCTGATGGTGGCTAA 1284 0.4206 MGNCWSLQSSSPGDRPNSNNNQSGSIQFSFGVSKRRLIQSDNSTSLGRSSHSGGTSRLFSKNYSTRNNTSTSFWGSDNSQASRVRDEEGFPDGQILDAANLKVFTLAELKGATRNFRADTVLGEGGFGTVYKGSIKDREASKRGEELTIAIKKLNSESKQGIAEWLSEVNFLGRLSHPNLVKLLGFGREDTELFLVYEFMQRGSLDNHLFGRGSNVRPLSWDTRLKVMIGAARGLNFLHSLEKKIIYRDFKPSNILLDKAYTVKLSDFGLAKSIQGDQTHVSTQIVGTYGYAAPEYIATGHLYVKSDVYGFGIVLVEMLTGKRIGDIMRLCQQKSLQDWLKSNLLNRGKIRTNMDARLEGKYPSNLALQVAQLTLKCIQTDPKIRPSMKEVVETLEQIEAANEKPADNRKRPTNSRVVQLHGQPDGG. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00714 427 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 200 410 - -
Seca12g00714 427 SUPERFAMILY Protein kinase-like (PK-like) 101 402 IPR011009 -
Seca12g00714 427 PANTHER OS01G0588500 PROTEIN-RELATED 61 399 - -
Seca12g00714 427 Gene3D Phosphorylase Kinase; domain 1 100 199 - -
Seca12g00714 427 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g00714 427 Pfam Protein tyrosine and serine/threonine kinase 119 395 IPR001245 GO:0004672|GO:0006468
Seca12g00714 427 FunFam Serine/threonine-protein kinase BIK1 83 199 - -
Seca12g00714 427 ProSitePatterns Protein kinases ATP-binding region signature. 122 153 IPR017441 GO:0005524
Seca12g00714 427 CDD STKc_IRAK 122 398 - -
Seca12g00714 427 MobiDBLite consensus disorder prediction 41 63 - -
Seca12g00714 427 Gene3D Transferase(Phosphotransferase) domain 1 200 421 - -
Seca12g00714 427 ProSiteProfiles Protein kinase domain profile. 116 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00714 427 MobiDBLite consensus disorder prediction 401 427 - -
Seca12g00714 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00714 Seca-Chr12 6528799 6532156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00714 93 403 Receptor kinase-like Gene Family AT4G02010 42.222 2.74e-79 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca12g00714 PK_Tyr_Ser-Thr 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00714 - - gmx:100813304 686.026