Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00709 ATGGAAGATGATGCAGAATGCATGACAGGGCTATGTCTGGGGCTGGGAATGGGAGGGCACCTTCCAAAAAAGGAGAAGCGGAAACTGAACAAGCCTCTGCCATGCCTTGACCTTGCCTTTGAGCTTTGTCCAAAAAGGGAAGTAAATCATCATTTTCATAACCCAAATGCAAAGAGCACCGATTCTGATAACTGCAGAAAGAAACTGAGGCTTACAAAGGAGCAATCAGACATGCTTGAAAACAGCTTCAAGCTCCATACCACTCTTAATCCTGTCCAGAAACAAGCACTTGCTGACCAATTGAATTTAAAGACAAGACAAATTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGTATACTCATTATCAAACAAAGTTGAAGCAAACAGAGGTGGATTATGAGTTGTTGAAAAAACAGTGTCAAAATCTAAGCGATGAGAACAAAAGGTTGAAGAAGGAATTGCAGGAACTGCGTGCACTGAAGCTTGGACCATCGCCTTTATGCATTCAGCTATCAAAAGCAGCCACTCTGAGTGTGTGTTCTTCGTGCGAGAAACTGTTAAAGATGAATGAAGGGAAGAACAACGTTGCCATCTCAGAAACAAAACTCAGAAATTAG 618 0.4191 MEDDAECMTGLCLGLGMGGHLPKKEKRKLNKPLPCLDLAFELCPKREVNHHFHNPNAKSTDSDNCRKKLRLTKEQSDMLENSFKLHTTLNPVQKQALADQLNLKTRQIEVWFQNRRARYTHYQTKLKQTEVDYELLKKQCQNLSDENKRLKKELQELRALKLGPSPLCIQLSKAATLSVCSSCEKLLKMNEGKNNVAISETKLRN. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00709 205 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 45 191 - -
Seca12g00709 205 SMART HOX_1 64 126 IPR001356 GO:0003677
Seca12g00709 205 SUPERFAMILY Homeodomain-like 58 123 IPR009057 -
Seca12g00709 205 Coils Coil 119 160 - -
Seca12g00709 205 CDD homeodomain 66 119 IPR001356 GO:0003677
Seca12g00709 205 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Seca12g00709 205 Gene3D - 72 118 - -
Seca12g00709 205 SMART halz 127 170 IPR003106 GO:0006355|GO:0043565
Seca12g00709 205 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Seca12g00709 205 Pfam Homeobox associated leucine zipper 127 161 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00709 Seca-Chr12 6497630 6499011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00709 64 200 Homeobox Transcription Factor Family AT4G37790 61.314 1.30e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca12g00709 Homeodomain 8.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00709 K09338 - gmx:100812222 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00709 12 6497630 6499011 Seca6g03784 6 105207910 105209319 PCT