Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00705 ATGACAATATTGACCAATACGGTTGAACTTGAGCTTCAACTTCAACTAGAATGCTTGCATTCTTCCCTAATAATGCATCGAAGAGCACTCCAAGAGAAAAACCCTTCATCCCCTGTGGATTTGCAGAGCTCCTCCTCAGGAAGCCACCACTCTGAATCATTGTTCTTTTTCCTTGGAGGGGTTGTAGTGCTCATCATATTGCTGATTCTTGTGTTTGTGTTTTGGAAGCGTATTAAACGGCCAGCACAGAAGATGGAGGAAACATCTCCAAAGAGTCAGCAGCATGGTAATTTAATTTGTGGAGAATATTTAAGACCACAATTTTCTAATGCTTGCAGCATAGTTTGTTTAATTTTGCTTATAAATGATCACATTTCTGCTGTTTGTGTTTGGAATTTTCCATTTGGGAAATATATTGAACCAGCAGAGGTGATGAAAATGACAGTCCCAAATGTTCAAGAGTCAGGGTTCATGGAATTCATTAGTGGAAACCTTCGGACAATTAGCTACTTTGATTTCCAGACATTGAAGAAGGCCACAAAGAATTTCCACCGAGGAAATTTTCTTGGAAGTGGTGGATTTGGACCTGTCTATCAGGGAAAATTGGCAGATGGAAGGCTGATTGCTGTTAAGAAATTGTCTCTTGACAAATCCCAACAAGGAGAAAGAGAATTTCTAGCAGAAGTGAGAATGATCACAAGCATCCAACACAAAAATCTGGTTCGCCTTCTGGGATGTTGTACAGATGGGCCTCAAAGGATACTTGTGTATGAATACATGAAGAACAAAAGTTTGGATCTTTTCATATATGGAAACAGTGATGAATTTCTGAATTGGAGGACTAGATTCCAAATTATTCTAGGAGTAGCGCGGGGATTGCAATACCTCCATGAGGATTCACATCTAAGAATTGTTCATCGAGATATCAAAGCAAGCAACATTCTCCTTGATGAAAAGTTTCGGCCAAGGATTGGAGACTTTGGGCTAGCTAGGTTCTTCCCTGAAGACCAAGCTTACCTTAGCACTCAGTTTGCTGGAACATTAGGTTATACTGCTCCTGAATATGCTATTAGAGGAGAACTATCAGAAAAGGCAGACATCTATAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGTTGCAGGAAAAACACAGATCTCACATTACCATCAGAAATGCAGTACCTCCCTGAATATGCATGGAAACTTTATGAGAAGTCAATGGTGATGGATCTTGTAGATCCAAAGCTGAGAGAAGATGGATTTGTAGAAAAGGATGTGATGCAGGCATTCCATGTGGCTTTCTTATGCCTGCAGCCTCTTGCGGATATGAGACCTGCCATGTCAGAGATAGTAGCATTGTTGACATTCAAAATTGAAATGGTTACAACACCAATGAGGCCAGCCTTCCTTGATAGAAGGCGCAAAATGGATGATGAGAACCACTCTTGGGAAGCCATATCCAAGTTCTGA 1470 0.4054 MTILTNTVELELQLQLECLHSSLIMHRRALQEKNPSSPVDLQSSSSGSHHSESLFFFLGGVVVLIILLILVFVFWKRIKRPAQKMEETSPKSQQHGNLICGEYLRPQFSNACSIVCLILLINDHISAVCVWNFPFGKYIEPAEVMKMTVPNVQESGFMEFISGNLRTISYFDFQTLKKATKNFHRGNFLGSGGFGPVYQGKLADGRLIAVKKLSLDKSQQGEREFLAEVRMITSIQHKNLVRLLGCCTDGPQRILVYEYMKNKSLDLFIYGNSDEFLNWRTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFRPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDLTLPSEMQYLPEYAWKLYEKSMVMDLVDPKLREDGFVEKDVMQAFHVAFLCLQPLADMRPAMSEIVALLTFKIEMVTTPMRPAFLDRRRKMDDENHSWEAISKF. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00705 489 FunFam Cysteine-rich receptor-like protein kinase 10 148 259 - -
Seca12g00705 489 SMART serkin_6 183 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00705 489 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 260 464 - -
Seca12g00705 489 ProSiteProfiles Protein kinase domain profile. 183 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00705 489 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 77 479 - -
Seca12g00705 489 CDD STKc_IRAK 189 455 - -
Seca12g00705 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Seca12g00705 489 Pfam Protein tyrosine and serine/threonine kinase 186 452 IPR001245 GO:0004672|GO:0006468
Seca12g00705 489 SUPERFAMILY Protein kinase-like (PK-like) 165 457 IPR011009 -
Seca12g00705 489 Gene3D Transferase(Phosphotransferase) domain 1 260 463 - -
Seca12g00705 489 Gene3D Phosphorylase Kinase; domain 1 157 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00705 Seca-Chr12 6458138 6461145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00705 171 470 Receptor kinase-like Gene Family AT1G56120 48.333 6.51e-97 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g00705 PK_Tyr_Ser-Thr 9.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00705 - - gmx:100812302 660.988